Sleb004463.1
Basic Information
- Gene Symbol
- lrrfip2
- Assembly
- GCA_003285725.2
- Location
- NW:2787559-2792806[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.056 7.5e+02 -1.3 2.6 35 94 37 94 21 100 0.51 2 4 0.41 5.4e+03 -4.1 0.6 37 49 151 163 130 180 0.44 3 4 6.1e-119 8.2e-115 382.8 27.2 1 299 272 564 272 565 0.98 4 4 0.15 1.9e+03 -2.6 3.4 218 240 591 613 567 638 0.46
Sequence Information
- Coding Sequence
- ATGCCGAGAAATAAAAAGTCAACGACGGCAACGGGAACGGgaacaacgccaacaacacGTTCGATacaaaaacttttgaaaaattccaaaactGCGCCAgaggaaaataataataccaagAAGGAGCAGCAGGAATTGCCAACACCATTGGATTCCAATCAGGCAACGACATCAGCGTTAACGTCAACGCCAACGTCGACGCAAAGACAAACAGACGGCGGCAGCGATGAAGTCATCGAAGAGTTTGATTTTAGCTCTAACGACCTAAAAGCTCTTGAAGACAGCGACGAAGCGACGTCGTTTGTGGAAGAAAACGTTGAGAGCGGACAAGTTAACGCCGTTGACGATGTCGATGCGaacgcagcaacagcaactgataacaaaaataaaaagccaaacaaaaagcaacaaatagaGCCAAGTCCcccaaagaaaaataataataataataatgtcgATGAAAACGACAGcagaacgaaaaaaaaaactgaaactgaaattaAAGCTGCAGTTGAAGCCGAAGCTGAAGAAGGGGAACTGTTATCGTTtgataacaataacaaagaaaTTGCAACAATTGCCATTTCCGCTCCTAGCCCCCCCAGTAATGATATCAGCAACTCAGCGCAATCAACAAAAACTACGCAGTGTCCACCTAATTTGGTCTTAAGTGACGACGCGCCAACTGAAGATACCTATTGTCCGATCACACCGCGTTGCATTGTCGATGATAACCAGTCGAGTGACAAAGACGACGTCGACGAGTCCGAAGATGAGCTTCTGGTGCAGTTTCTCGGTGAAGTGTATCCCATTGCCGAGGCGCGGTTGGCGGCACGACGGCAGGCGCGGGCGGAGGCGCGTGAAATACGGATGCGGGAATTGGAGCGCCAACAGAAAGAACAGGAACAGAATGCCGATCGTGTATTTGACATGCAAAGCGGTAGTGGGAATGCCAGTAGTATTGGCGACTCGCACTTCGCAAATCCCGCACGACTCGTCCATGGGCTCTTAAACGTGACACGCGCCACAACGTCGCGTCGCAGCAGCGAAGACTCGCTCGAGGAAGAGGGCCGAAGTCTGCGAGACATTAGGCATGAGCTTAAAGATGTTGAGGAGCGCTTCCGGAAAGCGATGATCACAAATGCCCAACTCGACAACGATCGTGCATCACAAACATATGAGGTGAAGCTGCTAAAGGATAAAATTGAGAGCATGCAGGAGGCATTCGCACAGCTGCAGCGTGAATTCAAAGAGAAGACGCGCGAGTGCAATGCATTTAAGCGTAATCTGGACAGGAGCACACTTGAGCTGAAGCTCGTGCAGGGGCAGTTGAATGAGCGTGACGCTCTTATAGCAGAACAGGGTCTTGTTATTGTAGTCATTGAGAATGCCGACGGTAGTGATGCCAAGCGAGCTCTAGTCAGTGTTGAGAATGCAAACATATTGGCTTCGGTCCAGGGGTCTCTAGATGTAAGACTCAAAAAGTTCAATGAGGAGAAGCAACAGTTGGTCGCTGAAGTTCAAAAGCTCCACGAACAGTTGGAGTCATTTAAAACAGAAGGCAAGATGGGTCGGGGCAGCTCATCCAATGGACCCTTCAGTTACGATGATGATTATGAGGCTCAAAGGGAAGCAAATAAGATCATATCAGACTATAAGTATAAACTGCAAAAGGCTGAACAGGAAGTCGCAAGTCTGCAGGCGAGCTTAGCACGTTCAGAGACACAAGTCATACGCTACAAGAGCACGGCAGAGGCGGCCGAGAAAGCGGAAGCGGAACTAAAAGTTGAGCGCCGCAAACTGCAACGAGAGCATCGGGAAACTTTGGAGCGGCTGGAGGAGGCGGAAACAGCAAATAATCATTTATTGAAACGTTTGGATAAATTGAAGAATGCAAAGAGCGCAATTCTGAAGGACTTATGA
- Protein Sequence
- MPRNKKSTTATGTGTTPTTRSIQKLLKNSKTAPEENNNTKKEQQELPTPLDSNQATTSALTSTPTSTQRQTDGGSDEVIEEFDFSSNDLKALEDSDEATSFVEENVESGQVNAVDDVDANAATATDNKNKKPNKKQQIEPSPPKKNNNNNNVDENDSRTKKKTETEIKAAVEAEAEEGELLSFDNNNKEIATIAISAPSPPSNDISNSAQSTKTTQCPPNLVLSDDAPTEDTYCPITPRCIVDDNQSSDKDDVDESEDELLVQFLGEVYPIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQSGSGNASSIGDSHFANPARLVHGLLNVTRATTSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMITNAQLDNDRASQTYEVKLLKDKIESMQEAFAQLQREFKEKTRECNAFKRNLDRSTLELKLVQGQLNERDALIAEQGLVIVVIENADGSDAKRALVSVENANILASVQGSLDVRLKKFNEEKQQLVAEVQKLHEQLESFKTEGKMGRGSSSNGPFSYDDDYEAQREANKIISDYKYKLQKAEQEVASLQASLARSETQVIRYKSTAEAAEKAEAELKVERRKLQREHRETLERLEEAETANNHLLKRLDKLKNAKSAILKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -