Spyr001191.1
Basic Information
- Insect
- Scaeva pyrastri
- Gene Symbol
- -
- Assembly
- GCA_905146935.1
- Location
- LR989929.1:9546973-9556236[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00091 0.12 13.7 0.2 1 23 142 165 142 165 0.97 2 23 1.1 1.4e+02 4.0 0.3 2 23 181 201 180 201 0.94 3 23 0.18 23 6.5 1.9 2 23 339 359 338 359 0.97 4 23 0.0016 0.2 13.0 2.3 1 23 365 388 365 388 0.95 5 23 0.00027 0.035 15.4 0.6 1 23 448 470 448 470 0.95 6 23 1.8e-07 2.3e-05 25.4 1.0 3 23 482 502 481 502 0.97 7 23 3.9e-05 0.0051 18.0 2.3 2 23 510 531 509 531 0.97 8 23 3.2e-05 0.0041 18.3 0.6 2 23 537 558 536 558 0.97 9 23 0.00065 0.084 14.2 3.6 1 20 564 583 564 586 0.94 10 23 0.0015 0.19 13.1 0.6 2 23 592 613 591 613 0.91 11 23 4.7e-06 0.00062 20.9 0.3 1 23 618 641 618 641 0.98 12 23 0.011 1.4 10.3 0.3 1 23 697 719 697 719 0.97 13 23 5.8e-06 0.00075 20.6 0.2 1 23 726 748 726 748 0.98 14 23 0.00029 0.037 15.3 0.7 1 23 753 775 753 775 0.98 15 23 2.7e-07 3.5e-05 24.8 1.1 1 23 781 803 781 803 0.99 16 23 0.0019 0.25 12.7 0.4 2 23 809 830 808 830 0.95 17 23 7.6e-05 0.0098 17.1 1.4 1 23 835 859 835 859 0.99 18 23 0.00014 0.019 16.2 0.5 1 23 869 891 869 891 0.98 19 23 0.00017 0.021 16.0 0.3 1 23 898 920 898 920 0.98 20 23 0.00038 0.049 14.9 0.8 1 23 925 947 925 947 0.98 21 23 4.3e-05 0.0055 17.9 0.8 1 23 953 975 953 975 0.98 22 23 0.0027 0.34 12.3 0.8 2 23 981 1002 980 1002 0.96 23 23 6.6e-05 0.0085 17.3 1.1 1 23 1007 1030 1007 1030 0.96
Sequence Information
- Coding Sequence
- ATGTTCGACTCGCTGCCCGTGTGTCGAGTGTGTTTGAAAACATCACTTGAATATATTGATTTCGATACTCCATTCGAGTTGGATGCTAGCATCAAAGCAATGGACAGCGATCTTACGTACCTTGATTGTTTTCAAGCTTGTACTCGTATCGAAATTGAATTCGATGAAAATTGCCCTCAAAGTTTATGCAGTTCATGTGGTCTTGAGCTAAAAATTGCCTACGAATTTCTGCAAAAAGCTGAAGCTGCTGATAAGACATTACGTGAAGTATCTGTGAATACAAAAGTTGAAAAATTCGATGATGAAGAAATGAAATGTTTTCTTCAACCTGAATTGGTATCATTGAATGAAAATTTGTCAACTGAAGGAACGGCAACTCAAGACCCAAAACCTACAGAAAATCATCTAGATGAAGAAAAAACATTTGTGTGTACAGTTTGCGGGGAACAATTTTATTCACAAATGGTTCTTAATATACACGTCAACCGTTTACACGCAAATAATTTGACGGCAGATCAAAGCAATGCAGTCGACAAAGTTGAATGTCAGATTTGTGAAATGATCTTGTCTATAGATAGCCTACACGACCATATGCAAATGCACGAAGAAGAATCCAACGTTCAAGAAAATGAAAATTACGATGAAAACCATGAGAAAACAATTTATGAGGAAGTAGTTATGGATGATCCCGTAGATGTCGAATTTGAAATGCTTGATATGACCAATGTTTCTATGGATGGGGAAGATGTGAGAAACGTAAATGATTTTCAAGAAGCAAATGAGTCTCAAGATGCAATTGACTCTCAAGATGCGAATGATTCCCAAGATGCAATTGATTCACAAGATGCAAATGATTCACAAGATGTTACTGCCTCCGAAGGCTATGAACCTGTTGACGAAGATGAAGAAGAGATGCTATCACAAATAAAAAATGAAACCGATTCAGATTTCCAAGTCATAGCTAAAATGATAACGGAGCAAGAAAAACATAGGTCTAAAAAGCAAAAATACAAACAATGTGAAATTTGCAAGAAGCATATTCGAATAACTTCTTTTACTGCCCACATGAATGTCCATAATGGTGTTCGTCAATTTCCATGCGATCACTGTTTTCAAGCATACTTTTCAAATCGATCATTGCAAAAACACATCAAGGCCAATCATTCTGATATTCTGAACTCCCGTTGTCTAACGTGCAATGAAACGGTTGAAGGTTCGACTATGAAGGCTCACGTAGAAGAAAGACATTCGCATGTAGTAAAGTGTACGGCGTGTGATCATGAATGTCAGGAGTCAAAAATGAAAGACCATATGAAGAGGAAGCATTCAGAATCCAAAGACTTTTTATGCAATGTTTGTTCCAAAACATTCAGTACACTTGGCATACTCAATGCCCATATGAAATATCACGAAAAAAAAGAAGTCAATGCCAAATCGGAGGCATGTGATATATGTGGCAAAGTATTCTCTTCGAATCATTATCTAAAAAAACACATGCTTATACATCAGGAGGAACGTGCCCTTTTACAATGTAATTATTGTGATAGGACCTATCACTCAAAAAATTCCCTAGAAAATCATGTGCGAATCCATACGGGTGACACAATAAAATGCGTTATGTGTTCAAAAGAGTTCGGCCGGCAGTACGAATTGAATGTACACATGCGATTTCACACAAAAGAATATCCATTCCAATGTGAGTTATGCCACAAAAAATTCGCCATTAAGGGTCATCTGAGGACGCATATGTGGCGTCATCAAGGCCTCAAGTTGCAGTGTGAAGAATGTGGAAAACTGTTTACATCTACCAAAGCGTTACAAGAGCATTCTTTCTATCATTCTGAGATGCCCTACCAATGTCCGTACTGTCCAAAAGCCTATCCTTCTAAGCCGAAATTCAAAGTTCATTTGAAAACTGCTCACATGGTGGAATTCTCGAATGAGGAATTACAAAAAATGGGCAAATTCACTGTACCAAAAAGACCTAGATCCAGAAAGTTTACCTTAGTTCAGGCTGATACGGTTATTAAAGAAGTTGAAGTTCATACCAAGGATCACTTGAAAATTCATGACGGTATCATTGAGTCCTACCCTTGTGAAATTTGCGGCAAAATATCCCCTTCGCGCCAATGTGCAAAGATTCATAGAAATATACATGATGAATCCCGTCCCACATATCCATGTGTTGATTGTGGCAAGATATTCGTAACTACTTCATCGCTAAGCTCCCATCGAAGGTGGCATACAGGAAAGGCTTTTAAGTGTGCTCAATGTCCAAAGATGTTTGTTCTTGAATCTGAATATAAAATTCATCTGAGATTTCATACGCACGATTATCCATATCAATGCGAAATGTGTGGCAAGAATTTTAATGTCAAAGGTCATTTGAATGCTCACATCAAAATGCATTTGGGTTGGAAGATTAAATGCAAAGAGTGTGGAAAGCTTTTTGCAACCAGGGCAGCATACTCGAGTCATGCATTCAAACACGGTGAAATGCCCTATAAATGTTTACATTGTCCCAAAGCTAAAACTTTCGCCCGTTCAAACAATTTAGCGGCTCACTTAAAAACTCATGAACGTCATGTGGACAAAAAAGAGACCTTCTCTTGCGAGATTTGCGGAAAAATTTCTACTTCGCGCAAAAATGCAAATGTTCACAGAAATACACATGATGAATCACGTCCCACATATACTTGTGTTGATTGTGGCAAGATATATCTTACACCGTCATCGTTAAACCAACATCGAAAGTGGCATACAGGAAAAGCCTTCAAGTGTGTCCAATGTCCAAAAATGTTCGTTCTAGAATCTGAATATAAAATTCATTTGCGATTTCATACGCACGATTATCCATATCAATGTGAAATTTGTGGCAAGAATTTTAACCTCAAAGTACATTTGGATGGCCACCTGAAGGTGCATTTAGGTTGGAAGATTAAATGCAAAGTATGTGGGAAACTCTTTGCCAGTCGAACCTCATATTCCGATCATGTTTTCAAACACAGTGAAATGCCCTATAAATGTTTTGAATGTACAAGGGGTTACCCTAGGAAGTCAAAACTAAGGGCTCATCTTAAAGCATCTCATTCACTGGATATGACTATGGACGAGATAAATAAATTATATGTTAAAGAGCCAACAGTCTTAAAAAGAAGAAAAGTAGAATGGATTAAAGTAGATCCTAATGAAAAAAATTAA
- Protein Sequence
- MFDSLPVCRVCLKTSLEYIDFDTPFELDASIKAMDSDLTYLDCFQACTRIEIEFDENCPQSLCSSCGLELKIAYEFLQKAEAADKTLREVSVNTKVEKFDDEEMKCFLQPELVSLNENLSTEGTATQDPKPTENHLDEEKTFVCTVCGEQFYSQMVLNIHVNRLHANNLTADQSNAVDKVECQICEMILSIDSLHDHMQMHEEESNVQENENYDENHEKTIYEEVVMDDPVDVEFEMLDMTNVSMDGEDVRNVNDFQEANESQDAIDSQDANDSQDAIDSQDANDSQDVTASEGYEPVDEDEEEMLSQIKNETDSDFQVIAKMITEQEKHRSKKQKYKQCEICKKHIRITSFTAHMNVHNGVRQFPCDHCFQAYFSNRSLQKHIKANHSDILNSRCLTCNETVEGSTMKAHVEERHSHVVKCTACDHECQESKMKDHMKRKHSESKDFLCNVCSKTFSTLGILNAHMKYHEKKEVNAKSEACDICGKVFSSNHYLKKHMLIHQEERALLQCNYCDRTYHSKNSLENHVRIHTGDTIKCVMCSKEFGRQYELNVHMRFHTKEYPFQCELCHKKFAIKGHLRTHMWRHQGLKLQCEECGKLFTSTKALQEHSFYHSEMPYQCPYCPKAYPSKPKFKVHLKTAHMVEFSNEELQKMGKFTVPKRPRSRKFTLVQADTVIKEVEVHTKDHLKIHDGIIESYPCEICGKISPSRQCAKIHRNIHDESRPTYPCVDCGKIFVTTSSLSSHRRWHTGKAFKCAQCPKMFVLESEYKIHLRFHTHDYPYQCEMCGKNFNVKGHLNAHIKMHLGWKIKCKECGKLFATRAAYSSHAFKHGEMPYKCLHCPKAKTFARSNNLAAHLKTHERHVDKKETFSCEICGKISTSRKNANVHRNTHDESRPTYTCVDCGKIYLTPSSLNQHRKWHTGKAFKCVQCPKMFVLESEYKIHLRFHTHDYPYQCEICGKNFNLKVHLDGHLKVHLGWKIKCKVCGKLFASRTSYSDHVFKHSEMPYKCFECTRGYPRKSKLRAHLKASHSLDMTMDEINKLYVKEPTVLKRRKVEWIKVDPNEKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00694864;
- 90% Identity
- -
- 80% Identity
- -