Basic Information

Gene Symbol
stc
Assembly
GCA_947532125.1
Location
OX383908.1:3363433-3379782[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2 2.2e+04 -4.3 1.6 15 19 430 434 429 434 0.81
2 14 0.12 1.3e+03 -0.2 0.6 4 10 464 470 463 470 0.93
3 14 0.00015 1.6 9.1 16.3 4 19 478 493 476 493 0.93
4 14 6.4e-08 0.0007 19.8 11.8 1 18 529 546 529 547 0.97
5 14 2.8e-05 0.31 11.4 14.7 1 18 588 605 588 606 0.98
6 14 0.0014 16 5.9 14.6 1 19 647 669 647 669 0.87
7 14 2 2.2e+04 -5.3 2.2 6 10 699 703 699 703 0.94
8 14 0.0037 40 4.6 7.2 1 11 709 719 709 720 0.95
9 14 0.069 7.6e+02 0.6 0.6 4 10 724 730 722 730 0.92
10 14 4.7e-07 0.0051 17.1 12.2 3 19 738 754 736 754 0.92
11 14 0.11 1.2e+03 -0.1 16.5 1 18 793 809 793 810 0.81
12 14 8.9e-08 0.00097 19.4 11.4 1 17 846 864 846 870 0.84
13 14 0.0011 12 6.3 4.0 1 11 876 885 876 886 0.98
14 14 0.59 6.5e+03 -2.4 1.3 13 19 925 934 924 934 0.84

Sequence Information

Coding Sequence
ATGTCTCAGTGGAATAATTCTTACGCTTACAATGGCCAATACCAAGCTGGAAATACCTGGAATGGTGATCCTACCAGCCAATATGTAAATCAACCTTATTACCCAAACAGACAAGACCCAAATAGTCAGTATGTTAATTTCAATGAGTTCTTAACACAAATGCAGAGTAATACCGCAGTTCCAAGCACAGCCTCGCATTACAGAAATGTTCAGTTTGAAAATTATCCGAATACACAATATAGTTACCAAAATATGCCCTCTAATAGTCAAAATGCCCAATTAGATAACTATACATATGGACAAAGCTCATCTAACATCCCTAGCAATACAGACATGTATCAAACGAATGTCCAGGCCCAATATATGATGCCAAATCATTCTTATGCAAATGATTTAATACTAAAATCTAATCTCACACCAACTGCAACAGAATTTGTGCCAAAAGGTATGATACCACCATCCACAAATAGCCAAAATATTGCCGAAACTCCCAGTACATTTAATGATATTCCTGAAGTCAAAAGTAAGCATACTAGCTCATCTGATACTAACTGGAGAGAAAGACCACAGACCTCCCAACAGAATGATGAAACAACCTATAGAGATCCTAATAGCCATTTACAGGAAAGTCAAAGGCCAGAAAGCAATGGCCGTAATAGAGAATCAAGACGTGATGGCCCATCAAATGGTCACTACTATGAGGGAAGTAATAGAAGCTATGAAAGAACCCAATATGAATCTGCAAACCGTAGCAATGATCAAAATGCTCGTAATTATGACTCCAGTACTCGGCAAGAGAAAAGGGTTCAAGCAAAACAGAATCCCAAATTAAAACCTAAAGATTCAGAAGTACGGACATTTTATAATAGTTCAATTAATAAGGATAGCCAGGATGTGAGAAACGGAAGAGGTGAGAGTTCAACCAAATCTAAAAATAGGGTAGGTAGTCACCGTCTTCGGGCCATAGATAGAAACAAAGTCGAAGATGAGGAATATGCAAATAACTATCTTCACCCAAAGCAAGAGAAGGCAGAGAAAAATAAGCCAGATTTATTTTCAAGCCCAATGAGATACAGAAACAAAAATTTGGACCAAGGTCACAAAGAAATGACACAAAGGGAGCGTCTCACAGAGCAATTAGAGAAAGGTACTCTGGAGTGCCTTGTGTGCTGTGAACGTGTTAAGCAAATAGATCCAGTCTGGTCATGTGGGAACTGTTACCACGTTTTACATCTCAGGTGTATAAGAAAATGGGCAATTAGTAGCATGGTTGAGGGAAAATGGCGCTGCCCAGCATGCCAAAACTCGAACAATGATAGCCTAGCGGATTACCGCTGCATGTGCGGCGCCGTCCGTTCACCAGAGTACCAGCGCGGTGCTAACTTAGCTCACACATGTGGGAAAGCGTGCAAAAGACCACGCAGTTGCCCGCATCCTTGCACATTACTCTGTCATCCTGGCCCATGCCCAGCATGCCAGGCAACAGTTATTAAACAATGTGGGTGCGGTGCCGAGACTCGTTCAGTCTTATGCAGTAGTAAATTGGCACAAGTTTGCGGAAGAGTTTGCGAGCGTACGCTGGAATGCGGCTTGCACAAATGTCTAAAAGATTGCCACGAAGGGCCTTGTGATACTTGTAATGAAACTGTTGTTCAAGTATGCTACTGCCCAGCGGCTAAGTCTCAATCAGTTCCTTGTACAAAAGAGACGAGTAAGAGCAAGCATTGGTCATGTGATAGTGAGTGTGGCCGTGTGCTGTCATGCGGTGCCCACGTGTGTCGACAGGCCTGTCACCCGCCGCCCTGTCCGCCTTGCGTTCTGCTGCCAGAGACTGTGCTCACTTGCCCTTGTGGGAATACCAGGTTAGAAAAGGATAAACGTAAATCATGTACGGACCCAATTCCTTTGTGTGGGAATATCTGTGCGAAACCGTTAACTTGTGGACCGCCTGGAGACAAACATTTTTGCAAGGTCGATTGCCATAACGGCCCTTGCCCTGGATGCCCTGATAAAACAGTCCTGCAGTGTCGCTGTGGCCATTCGAGCCGTGAAGTGCCCTGCGCCGATCTGCCTCAGATGTACAACAATGTACTATGCCAGAAAAAATGTAACAAGAAATTGTCATGCGGTCGTCACCGGTGCAGGACGTTGTGCTGTGCAGACAGCGTACACCGTTGCACGTTAGTGTGTGCGCGTTCGCTGCCCTGCCAAACGCATCGATGCGAAGAGTTCTGCCACACGGGCCGCTGTGCGCCCTGTCCCAGGCTCAGCTTCGAAGAGCTGCGATGCGAATGCGGCGCCGAAGTGATGTTGCCACCAGTGCCGTGCGGCACCAAGCCGCCCGCCTGCTCAGCCCCATGCCGCAGACCCCGACCCTGTGGGCACCCGCCCCACCACTCCTGCCACTTGGGCGACTGTCCGCCCTGCGTCGTGCTGACAACCAAGCGTTGCCATGGGAATCACGAAGAAAGGAAAACGATACCGTGCTCGCAGGAGGAGTTCTCCTGTGGACTGCCATGCGGGAAGCCGCTACCGTGCGGGAAACACACTTGTATCAAGACGTGCCACAAGGGACTCTGTGATACCAGCAAATGCACGCAACCGTGTAATGAGAAGCGACCGAGCTGCGGGCACCCGTGTGCCGCTCCGTGCCACTACAGCGCGGAGCCGGAGGGCGGCGGAGGCGGAGGCGGCGGCGGCGGAGGCGGAGGCGGCGGCGGAGGCGGCGGCGGCGGAGGCGGAGGCGGCGGCGGAGGCGGCGGCGGCGGCGGAGGCGCGTGCCCGAGCGCGGCGCCGTGCCGCAAGTCCGTGCGCGCCATCTGCCCGTGCGGACGCCGCAGCGCCGAGAGACCCTGCTGGGAGAACGCCAGGGACTACGCCAAGATGATGAGCGCATTGGCTGCAACAAAAATTCAAGAAGGTGGCTCCGTGGATTTATCTGATGTACAACGTCCTGGCAACGTACTCAAAACATTGGAGTGCGAGGAGGAGTGCCGGGCGGAGGCGCGAGCGAGACAGCTGGCGCTGGCGCTGCAGATACGCAACCCGGACGTGTCGAGCAAGCTGGCGCCGCGGTACAGCGAGCACGTGCGCGCGACCGCGACGCGCGAGCCCGCGTTCGCGGTGCACGTGCACGACAAGCTCACCGACCTCGTGCAGCTCGCCAAGAAGTCGAAACAGAAGACCCGCGCGCACTCGTTCCCGTCTATGAACTGGCAGAAGCGTCAGTTCATACACGAGATGTGCGAGCACTTCGGCTGCGAGAGCGTCGCCTACGACGCCGAGCCAAATAGAAACGTTGTCGCCACTGCTGATAAAGAGAAATCATGGCTCCCAGCGATGAGTATAATGGAGGTGCTGGCGCGTGAAGCCGGCAAGCGTCGTGTGCCGGGTCCCGTTCTGCGCTCCAATGCCGTCGCATCAGGCGGAGGCTCCGCCTCATCATCCAGCGGCTCGTCGTCCGCGACATACGCCTCCAAATCATCCGGCGGCTGGGCAACACTCACGCCAACGAACGCTTGGGCCGCCCGCAGTCAGCCCAAACCTCAACCGACCGACAATAAAATAGATTATTTCGATAACCCACCGGACAACTAA
Protein Sequence
MSQWNNSYAYNGQYQAGNTWNGDPTSQYVNQPYYPNRQDPNSQYVNFNEFLTQMQSNTAVPSTASHYRNVQFENYPNTQYSYQNMPSNSQNAQLDNYTYGQSSSNIPSNTDMYQTNVQAQYMMPNHSYANDLILKSNLTPTATEFVPKGMIPPSTNSQNIAETPSTFNDIPEVKSKHTSSSDTNWRERPQTSQQNDETTYRDPNSHLQESQRPESNGRNRESRRDGPSNGHYYEGSNRSYERTQYESANRSNDQNARNYDSSTRQEKRVQAKQNPKLKPKDSEVRTFYNSSINKDSQDVRNGRGESSTKSKNRVGSHRLRAIDRNKVEDEEYANNYLHPKQEKAEKNKPDLFSSPMRYRNKNLDQGHKEMTQRERLTEQLEKGTLECLVCCERVKQIDPVWSCGNCYHVLHLRCIRKWAISSMVEGKWRCPACQNSNNDSLADYRCMCGAVRSPEYQRGANLAHTCGKACKRPRSCPHPCTLLCHPGPCPACQATVIKQCGCGAETRSVLCSSKLAQVCGRVCERTLECGLHKCLKDCHEGPCDTCNETVVQVCYCPAAKSQSVPCTKETSKSKHWSCDSECGRVLSCGAHVCRQACHPPPCPPCVLLPETVLTCPCGNTRLEKDKRKSCTDPIPLCGNICAKPLTCGPPGDKHFCKVDCHNGPCPGCPDKTVLQCRCGHSSREVPCADLPQMYNNVLCQKKCNKKLSCGRHRCRTLCCADSVHRCTLVCARSLPCQTHRCEEFCHTGRCAPCPRLSFEELRCECGAEVMLPPVPCGTKPPACSAPCRRPRPCGHPPHHSCHLGDCPPCVVLTTKRCHGNHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCIKTCHKGLCDTSKCTQPCNEKRPSCGHPCAAPCHYSAEPEGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGACPSAAPCRKSVRAICPCGRRSAERPCWENARDYAKMMSALAATKIQEGGSVDLSDVQRPGNVLKTLECEEECRAEARARQLALALQIRNPDVSSKLAPRYSEHVRATATREPAFAVHVHDKLTDLVQLAKKSKQKTRAHSFPSMNWQKRQFIHEMCEHFGCESVAYDAEPNRNVVATADKEKSWLPAMSIMEVLAREAGKRRVPGPVLRSNAVASGGGSASSSSGSSSATYASKSSGGWATLTPTNAWAARSQPKPQPTDNKIDYFDNPPDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01316958; iTF_00114613;
90% Identity
-
80% Identity
-