Basic Information

Gene Symbol
stc
Assembly
None
Location
AY:868783-900341[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 2 1.5e+04 -4.2 1.6 15 19 430 434 429 434 0.81
2 13 0.12 8.6e+02 -0.2 0.6 4 10 464 470 463 470 0.93
3 13 0.00014 1 9.2 16.3 4 19 478 493 476 493 0.93
4 13 5.6e-08 0.00041 20.0 11.9 1 19 529 547 529 547 0.97
5 13 1.5e-05 0.11 12.3 13.5 1 18 588 605 588 606 0.98
6 13 0.0014 10 6.0 14.6 1 19 647 669 647 669 0.87
7 13 2 1.5e+04 -5.2 2.2 6 10 699 703 699 703 0.94
8 13 0.0036 26 4.7 7.2 1 11 709 719 709 720 0.95
9 13 0.051 3.7e+02 1.0 0.4 4 10 724 730 722 732 0.92
10 13 4.6e-07 0.0033 17.1 12.2 3 19 738 754 736 754 0.92
11 13 0.036 2.6e+02 1.5 17.2 1 18 793 809 793 810 0.81
12 13 8.8e-08 0.00065 19.4 11.4 1 17 846 864 846 870 0.84
13 13 0.0042 31 4.4 9.5 1 13 876 887 876 888 0.95

Sequence Information

Coding Sequence
ATGGCCCAGTGGAATAATTCTTACGCTTATAATAGTCAATTCCAACCTGGAAACATTTGGAATGGTGATCCTAACAGCCAATATGTAAATCAATCTTATTACCCAAATAGACAAGACCCGAGTAATCAGTATGTTAATTTCAATGAGTTCTTAACACAAATGCAGAGTAATACTGCAGTTCCGGGAACAGGTCAGCATTTCAGAAATGTTCAGCTTGAAAACTTTCCGACCACACAATATAATTACCAAAATATGGCCTCTAACAGTCAAAATACCCAATTAAATAACTATACATATGGGCAAAGCTCATCCAACATTCCTAGTAATACAAACTTATATCAAACAAATGTGCAGACCCAATATATGATGCCAAATCAGCCTTATGCAAATGACTTAATATTAAAATCAAACCTTACACCGACTGCAACAGAATTTGTGCCAAAAAGTATGATACCACCAACCACAAACAGCCAAAATATTTCCGAAACTTCTCATACATTTAATGACACTGCTGAGGTCACGAGCAAGCAGGTTAGCTCATCTGATACTAACTGGAGAGAAAGACCACAGACCTCCCAACAAAAAGATGAAATAACCTACAGAGATCCTAATAGTTATTTACAAGAAATTCAAAGGCCACAAGGTAGTGGTCGTAATAGAGAGACGAGTCGTGATAGTCATTCAAATGGTCACAACTATGAGACAAGTAATAGAAGCTATGACAGAAATCAGTACGAATCTGGGAACCATAGCAATGAACAAAACACTCGTAACTATGAGTCCAATACTCAGTATGAGAAAAGGGTCCAAGCAAAACAAAATTCTAAAATGAAACCCAAAGATTCAGAGGTGCGCACATTTTATAATAGCTCAATTAATAAAGATAGCCAGGATGTGAGAAATGGAAGAGGTGAGAGTTCCAACAAATCTAAAAACCGAGTTGGAAGTTACCGTCTTAGGGCTATTGATAGAAACAAAATTGAAGATGAGGAATTCGCCAATAACTATCTGCAACAGAGGGATGAGAAAGTGGAGAAAGATAAACCAGGGATATTTTCCAGTCCAATGAGAAATAGAAACAAAAATATAGACCAAGGTCACAAGGAAATGACACAAAGGGAGCGTCTTACAGAACAATTGGAGAAGGGTACTCTAGAGTGCCTTGTGTGCTGTGAACGTGTTAAACAAATAGACCCAGTGTGGTCCTGTGGGAATTGTTACCATGTTTTACATCTCAGGTGCATTAGAAAATGGGCAACCAGTAGCATGGTCGAGGGCAAATGGCGATGCCCAGCATGTCAAAACTCAAACAACGACAGCCTATCAGATTACCGCTGCATGTGTGGTGCAGTCCGTTCACCAGAGTATCAGCGCGGTTCTAACCTCGCTCACACATGCGGGAAAGCTTGCAAGAGACCACGCAACTGTCCGCATCCTTGCACTTTGCTCTGCCACCCTGGTCCATGCCCAGCATGCCAGGCAACTGTGATTAAACAGTGTGGCTGTGGTGCAGAGACTCGTTCAGTGTTATGCAGTAGTAAATTGGCACAAGTTTGCGGACGCGTGTGTGACCGTACGTTGGAATGTGGATTGCACAAATGCTTAAAGGATTGCCACGAAGGACCTTGTGATACTTGTACTGAAACTGTTGATCAAGTGTGCTACTGCCCAGCGGGTAAGTCTCAGTCAGTCCCGTGTACAAAAGAGACCAGTAAGAGCAAGCACTGGTCATGTGGTAGTGAGTGTGGTCGGGTCCTGTCATGCGGTGCACACGTATGTAGACAGGCCTGTCACTCGCCGCCGTGTCCGCCCTGTGTGCTACTGCCAGTGACTGTGCTTACTTGTCCTTGTGGAAAGACCAGGTTAGAAAAGGATAAACGTAAATCGTGTACAGACCCTATTCCTTTATGTGGGAACATCTGTGCGAAACCTTTAACTTGTGGCCCACCGGGAGACAAACATTTCTGCAAAGTCGACTGCCACAATGGTCCTTGCCCCGGTTGCCCTGATAAAACTGTCCTGCAGTGTCGTTGTGGCCATTCGAATCGCGAAGTACCTTGCGCCGACCTGCCACAGATGTACAACAATGTACTCTGCCAGAAGAAATGTAACAAGAAATTGTCATGCGGTCGACACCGGTGCAGGACATTGTGCTGTGCGGAGAGCGTACACCGTTGCACGTTAGTGTGCGGGCGTTCGCTTCCCTGCCAAACACATCGCTGCGAGGAGTTCTGCCACACAGGACGTTGTGCTCCTTGCCCCAGGCTCAGCTTCGAGGAGCTACATTGCGAGTGTGGGGCCGAAGTGATCTTGCCACCAATACCATGTGGTATGAAGCCCCCAGCGTGCTCGGCGCCGTGTCGCCGCCCCCGACCATGTGGCCATCCGCCCCATCACTCCTGCCACTCGGGGGACTGCCCGCCCTGCGTCGTGCTCACCACCAAGCGTTGCCACGGGAATCACGAAGAAAGAAAAACAATACCATGCTCACAAGAGGAGTTCTCCTGCGGACTGCCTTGTGGGAAGCCGTTACCTTGCGGCAAACATACTTGCATCAAGACATGCCACAAGGGACTATGTGATACTAGCAAATGCACGCAACCGTGTAACGAGAAGCGTGCGAGCTGCGGGCACCCGTGCGCCGCGCCCTGCCACCACGGCGCCGTGTCCGACGGCGGCGATACGCTCTGTCCCAGCACTACGCCCTGCCGCAAGCCCGTGCGCGCCATCTGTCCGTGCGGACGACGCAGTGCGGAGAGACCCTGCTGCGAGAACGCACGCGACTACGCCAAGATGATGAGTGCATTGGCTGCAACGAAAATGCAAGAGGGAGGTTCTATGGATTTATCAGATGTACAACGTCCCGGCAACATGCTCAAAACGTTGGAATGCGAAGAGGAGTGCCGAGCGGAGGCACGCGCGAGGCAATTAGCGTTAGCGCTGCAGATCCGCAACCCGGACGTGTCGAGCAAGCTCGCACCGCGGTACAGCGAGCACGTACGCGCCACCGCCACACGTGAACCCGCCTTCGCGATGCACGTGCACGACAAGCTCACCGACCTCGTGCAGCTCGCTAAGAAGTCAAAACAGAAGACCCGAGCTCACTCGTTCCCATCTATGAACTGGCAGAAGCGTCAGTTCATACACGAGATGTGCGAACACTTCGGTTGCGAGAGCGTCGCGTACGACGCCGAGCCGAATAGGAACGTCGTCGCAACTGCAGATAAGGAGAAATCATGGCTCCCTGCGATGAGCATAATGGAGGTGCTGGCCCGTGAGGCCGGCAAGCGCCGCGTGCCCGGCCCCGTGCTGCGGTCCAACGCTGCCACTACTAGTGGAGGCTCCGCCCAAACATCCAGTGGCTCGTCTTCCACTACATACGCCTCAAAATCATCCGGTGGCTGGGCGACGCTTACATCGACAAACGCATGGGCGGCACGCAGCCAGCCCAAGCCGCAACCGAACGACAATAAAATAGATTATTTCGATAACCCACCGAACAACTAA
Protein Sequence
MAQWNNSYAYNSQFQPGNIWNGDPNSQYVNQSYYPNRQDPSNQYVNFNEFLTQMQSNTAVPGTGQHFRNVQLENFPTTQYNYQNMASNSQNTQLNNYTYGQSSSNIPSNTNLYQTNVQTQYMMPNQPYANDLILKSNLTPTATEFVPKSMIPPTTNSQNISETSHTFNDTAEVTSKQVSSSDTNWRERPQTSQQKDEITYRDPNSYLQEIQRPQGSGRNRETSRDSHSNGHNYETSNRSYDRNQYESGNHSNEQNTRNYESNTQYEKRVQAKQNSKMKPKDSEVRTFYNSSINKDSQDVRNGRGESSNKSKNRVGSYRLRAIDRNKIEDEEFANNYLQQRDEKVEKDKPGIFSSPMRNRNKNIDQGHKEMTQRERLTEQLEKGTLECLVCCERVKQIDPVWSCGNCYHVLHLRCIRKWATSSMVEGKWRCPACQNSNNDSLSDYRCMCGAVRSPEYQRGSNLAHTCGKACKRPRNCPHPCTLLCHPGPCPACQATVIKQCGCGAETRSVLCSSKLAQVCGRVCDRTLECGLHKCLKDCHEGPCDTCTETVDQVCYCPAGKSQSVPCTKETSKSKHWSCGSECGRVLSCGAHVCRQACHSPPCPPCVLLPVTVLTCPCGKTRLEKDKRKSCTDPIPLCGNICAKPLTCGPPGDKHFCKVDCHNGPCPGCPDKTVLQCRCGHSNREVPCADLPQMYNNVLCQKKCNKKLSCGRHRCRTLCCAESVHRCTLVCGRSLPCQTHRCEEFCHTGRCAPCPRLSFEELHCECGAEVILPPIPCGMKPPACSAPCRRPRPCGHPPHHSCHSGDCPPCVVLTTKRCHGNHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCIKTCHKGLCDTSKCTQPCNEKRASCGHPCAAPCHHGAVSDGGDTLCPSTTPCRKPVRAICPCGRRSAERPCCENARDYAKMMSALAATKMQEGGSMDLSDVQRPGNMLKTLECEEECRAEARARQLALALQIRNPDVSSKLAPRYSEHVRATATREPAFAMHVHDKLTDLVQLAKKSKQKTRAHSFPSMNWQKRQFIHEMCEHFGCESVAYDAEPNRNVVATADKEKSWLPAMSIMEVLAREAGKRRVPGPVLRSNAATTSGGSAQTSSGSSSTTYASKSSGGWATLTSTNAWAARSQPKPQPNDNKIDYFDNPPNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01317904;
90% Identity
-
80% Identity
-