Spav012134.1
Basic Information
- Insect
- Saturnia pavonia
- Gene Symbol
- -
- Assembly
- GCA_947532125.1
- Location
- OX383923.1:8013448-8031718[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0002 0.011 16.4 2.0 2 23 299 321 298 321 0.95 2 10 0.013 0.72 10.7 6.5 1 23 327 349 327 350 0.95 3 10 1.6 88 4.1 0.9 1 23 354 376 354 376 0.96 4 10 0.0029 0.16 12.8 3.2 1 14 380 393 380 404 0.79 5 10 0.22 12 6.8 0.1 3 23 468 489 467 489 0.92 6 10 1.7e-05 0.00092 19.8 2.3 1 23 493 516 493 516 0.94 7 10 0.0009 0.05 14.4 0.2 3 23 541 561 540 561 0.97 8 10 3.9e-06 0.00021 21.8 0.1 1 23 567 589 567 589 0.98 9 10 7.8e-05 0.0043 17.7 1.3 1 23 595 617 595 617 0.98 10 10 0.00015 0.008 16.9 0.4 1 23 623 646 623 646 0.97
Sequence Information
- Coding Sequence
- ATGTGGCCTGCGTCAGAAAGTATGGTATATCCATCAAAAGACGAGGTGAAGAGCGAGTTGTTCCCGTGTCGAGGATGCCTCGGAAATGGACAGATGTACAACATGCACCAGTATGGTTTGGCGGAGCCTTACAAACAACTTGTCGGTGTTGAGGTGCGCGCCACGAATCTATTGCCACAACATCTATGTTACATATGCCGTGCATTCCTGATCAAGTTTTCAGTGTTCCGAGAGAGATGTCAAAGGACCGAGGTGTTGCTGCAGAGTCTAGCCATTGTGAACCCAATGATAACGACTGAAGACATATCTAGTATAGACCGATTCACCCAGAGATTAGCACCGGCCTACATCCAAACCAAACCTTACACCATTAGTATAACAGATTCAATAGAGTACAGTGAAGAGAGACAAGAATGTTACACAGAACAAAACAGTAACGCCAGTTTTGATGATTATAAAAATGATATAATCCCAGCAGTTGAAGAAGATGACCAAAAATCAGGCATAGATTTCTTCGAAACAGACGCTTTTGATCCAGAGGATATTAAACTGAGCGATCTGAAACGCGAGAAAACATTAAAAAAGAGCAAGAGACTGATGAAAAAGAACAAAAAAGACTTGGGAATAAAAGTTAGCGAGAAAAAGAGAAATATTAAAAGGGAAGTTAAGGAGGAGAGTTTGGTGGAGATCGAAATAGATACAGCGGAAGTAGTGGAGAAAGCGGCGGTTAGGCGGAAATCGAAGCCGCGCGTAAATAATTTGTACTCAGACCCTGAGGATCGGGAGAAGTTTTCTCAGAAATATGATGTGGATATTATAGTGATGACGAAGGAGGATGAAATGAATGATATGCTGGAGAGGAAGAACAGTCCCAAGTACCTTCGGGCCCATAATAAATGCGAGGAGTGTTATAAAGGCTTTATCCATGAGGACACGTTGAAGAGGCATATAAAAGACAAACACGATCCTAGCTTGGAACACGTGTGCGAGTTCTGCCGGTTCCGTTTCAGCAAGCGCGTGAACTTAACCGGACATTACCGGAGACATCACAAGTATAAATACATTTGCAGGGTCTGTACCATCGTGACACGAATGCGCGAGCACGCCGTTCAACACTCGAAGATGCACACGCAAAAATTTCAGTGTAAATACTGCGGGAAGACATTTAACACCAAAGGCACGACTTACCACGCGCACGTGCGAAGCAAGCACAGCTCTGAGCTGCCGTGGTGCAGGATATGCGGGGACGCCTTCGTCTGCACCAAGACTCACATGGAAAGGCTGCACAAACAGGCGTTGGACCCGGCCCCCGAGTTGCAGTGTCCCCAGTGCAAGGTTCAGTTCCTGAGCACGACGGCCGTGTTCGCGCACGGGCGCGCCGGCTGCGGTGCGCCGGCCGCCTGCCTGCACTGCGGTCTCGGGTTCGACGCGGAGACTGACTTACGGGAACACGTGCTAGCTCAGCACAAGATACAGTACCCGTGCGATAAGTGTAACAAAGTGTTCAGCCACGAGAGTAAGCTGAATAACCACACTCTGGAGAAGCACTGCGAGCCGGAGCCCGGGCCGGAGGGACAGCGCTCCGCCCGCAAGCGCTACATGAAGGTGGTGCCCGCCATGTGCGACATTTGCGGGAAGATTATTGCGGATCAGTACCATATGGTATACCACCAGCGCATTCACACGGGGGAGAAACCGTACGCGTGCGCCGACTGCCCCAAGAGGTTCAGGATGCCGGAACAGCTCCAAAACCACGTCCGGATCCACACGGGTGAGCGTCCGTTCAAATGCAAGTACTGCCCGAGCTCGTTCAAGACGTACCCGGCGCTCAGCCGGCACCGGCTTGTGCACACGGGCGAGCGCCGGTACCCGTGCCCCGTCTGCAGGAAGCACTTCGCCACCACCGCGGAGATGAAGACCCACCTCGCCACCGTCCACATGAAGATACCGAAGCCGCCTCGTAACAGGAGACGGAATAAACAAGCACTACCTTGA
- Protein Sequence
- MWPASESMVYPSKDEVKSELFPCRGCLGNGQMYNMHQYGLAEPYKQLVGVEVRATNLLPQHLCYICRAFLIKFSVFRERCQRTEVLLQSLAIVNPMITTEDISSIDRFTQRLAPAYIQTKPYTISITDSIEYSEERQECYTEQNSNASFDDYKNDIIPAVEEDDQKSGIDFFETDAFDPEDIKLSDLKREKTLKKSKRLMKKNKKDLGIKVSEKKRNIKREVKEESLVEIEIDTAEVVEKAAVRRKSKPRVNNLYSDPEDREKFSQKYDVDIIVMTKEDEMNDMLERKNSPKYLRAHNKCEECYKGFIHEDTLKRHIKDKHDPSLEHVCEFCRFRFSKRVNLTGHYRRHHKYKYICRVCTIVTRMREHAVQHSKMHTQKFQCKYCGKTFNTKGTTYHAHVRSKHSSELPWCRICGDAFVCTKTHMERLHKQALDPAPELQCPQCKVQFLSTTAVFAHGRAGCGAPAACLHCGLGFDAETDLREHVLAQHKIQYPCDKCNKVFSHESKLNNHTLEKHCEPEPGPEGQRSARKRYMKVVPAMCDICGKIIADQYHMVYHQRIHTGEKPYACADCPKRFRMPEQLQNHVRIHTGERPFKCKYCPSSFKTYPALSRHRLVHTGERRYPCPVCRKHFATTAEMKTHLATVHMKIPKPPRNRRRNKQALP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01316716;
- 90% Identity
- iTF_00113604; iTF_00112765;
- 80% Identity
- -