Spav000119.1
Basic Information
- Insect
- Saturnia pavonia
- Gene Symbol
- Zfa
- Assembly
- GCA_947532125.1
- Location
- OX383917.1:2415380-2438720[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.021 1.2 10.0 5.1 1 23 228 250 228 250 0.98 2 11 0.46 25 5.9 1.3 1 23 257 279 257 279 0.95 3 11 0.15 8 7.4 0.2 1 23 283 306 283 306 0.94 4 11 4.3e-06 0.00024 21.7 1.6 1 20 314 333 314 337 0.96 5 11 0.00012 0.0064 17.2 2.8 2 23 344 366 343 366 0.97 6 11 0.0011 0.059 14.1 1.8 2 23 380 401 379 401 0.96 7 11 3.8e-05 0.0021 18.7 0.7 1 22 407 428 407 432 0.94 8 11 4.1e-05 0.0023 18.6 1.1 2 23 441 463 440 463 0.96 9 11 0.00015 0.0084 16.8 0.4 1 23 469 492 469 492 0.97 10 11 3e-05 0.0016 19.0 2.8 1 23 501 523 501 523 0.99 11 11 0.00043 0.024 15.4 0.1 1 23 529 552 529 552 0.96
Sequence Information
- Coding Sequence
- ATGGAGAATAATCTGGATATTACGAAAATATGTTACGGTTGTTTATGTAGTGTAAATGAAAGCAAACTCTTCAAATTTAATATTGAAAATGGACCTCTACAAAGCGTTTTCCAGGTTAAAACAATCAATCTATGTTACTTGTGTAAGAGGTCCGCAGAAAAAGTATCAACATTTATTCAAAATGTTCAAAGTAATCAATTGCTATTGGAAAACGGACAAGTTCTTATGGATTCGACATTTGAAACAATGAAAGCACAAGTCAGTCCACTATTAAATCTTAACCAAGTTACGTTAGACTGTATAGAGTTGTCGGACACTGGTACTGATACTGATGAATCATTTACTGTATTTGGATTTGGATGTAAACAAACAGTAATCAAGGCTGAAATGAAGGAGGAATATGCGGAACCCCTGGAACAAATAGATAAGGAATTTAGTAATGATGAGGATGAATATCCTGATCAATATCTCAAAGAGGAGGATAGGTTTCCAATAACCGATTTACTGGAAACTGATGTGAAAGTAAAGGATATAGGCATAATGAGTCTTAAAGATTTGCTGAAACAAAGCAAACCAATTGCTAAAGAGAGACCACTGATAGAGAAAATCTTCTTAACGACAAAGCAATGTATGGAAGAAAGAGAGAAGCTGATACTTGATCAGAAATACCAAGAGTTCACGTTTAAATGTCGATATTGCATCAAAGGGTTCGAGAACAAAACGTGCTACGAAAGACATATGGATAAACACAGTGAGGCCGCTGGTGATTTCATCTGTGAGATTTGTAACATGCGAAAGGACACATCTTTCAAACTGGCAAGACATAGAAGCTACCATATTATTCGATATAAATGTGCGGAATGTGGTTTGATAAGGAACAATAGGGCTACTATAAAAGAGCACTACAATGCCTATCACGCTATTAATGGCTACCATCAGTACAATTGCCCGCATTGCCCGAAGAATTTCAAGCGTCAGGTATCATTAAAGAAGCATATATGGTACGCGCATAAGACAAAAGGGAAAGTGACCTGCGCGTACTGTCACAAGACTTACGCTCATAAGGAAGTGCTCAAAGTTCATATGATGACGAGGCACGCGGAAGACGTGTCGTCGGTCGAGAAACCGAAGCGCTGGGTTTGCCAAGAGTGCGGCGCCGCGTTCAAGTGCCCATCGCACCTGAAGAAGCACAGCATTACGCACGTACACAGCAAGGATTTCTACTGCGTCGAATGTGATAAAAATTTCAAATCAGATTCGACGTTGAAACAACACCTCAAGACAGCTCTAGCTCATGTGAATTATGTCCAATTACCACTCCCCTGCGAGCACTGTAGCAAGCGCTTCGCGATAAGGAGAGACCTCGAGAGGCACATGAACAGGATTCATTTGAATGTCAAACCGTTTCAATGCGACCGCTGTGAAAAGGCTTATGTGAACTCTTGGTCTTTGACAGAACATAAGCGATTGATACACGAAGGTTACAAGAGACCGCTAAAATACCCTTGCCCGATGTGCGACAAAGCGTTCCATCGTAACCACATTCTGAAATCCCATATTAGGACCCACACTGGCGAGAGACCGTATCAGTGTAGTAAATGTCCCGCACAGTTCAGCCAAGCGAGCGTCCTCGCGACCCACGTCAAGCTGATACACCTCAAGCTGACCAGAGATGGAAGACCGAAAGCTTTGGCTATCAAATAA
- Protein Sequence
- MENNLDITKICYGCLCSVNESKLFKFNIENGPLQSVFQVKTINLCYLCKRSAEKVSTFIQNVQSNQLLLENGQVLMDSTFETMKAQVSPLLNLNQVTLDCIELSDTGTDTDESFTVFGFGCKQTVIKAEMKEEYAEPLEQIDKEFSNDEDEYPDQYLKEEDRFPITDLLETDVKVKDIGIMSLKDLLKQSKPIAKERPLIEKIFLTTKQCMEEREKLILDQKYQEFTFKCRYCIKGFENKTCYERHMDKHSEAAGDFICEICNMRKDTSFKLARHRSYHIIRYKCAECGLIRNNRATIKEHYNAYHAINGYHQYNCPHCPKNFKRQVSLKKHIWYAHKTKGKVTCAYCHKTYAHKEVLKVHMMTRHAEDVSSVEKPKRWVCQECGAAFKCPSHLKKHSITHVHSKDFYCVECDKNFKSDSTLKQHLKTALAHVNYVQLPLPCEHCSKRFAIRRDLERHMNRIHLNVKPFQCDRCEKAYVNSWSLTEHKRLIHEGYKRPLKYPCPMCDKAFHRNHILKSHIRTHTGERPYQCSKCPAQFSQASVLATHVKLIHLKLTRDGRPKALAIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01312573; iTF_00113536; iTF_00114322; iTF_00112780; iTF_01316658;
- 90% Identity
- -
- 80% Identity
- -