Spav010216.1
Basic Information
- Insect
- Saturnia pavonia
- Gene Symbol
- -
- Assembly
- GCA_947532125.1
- Location
- OX383920.1:1863283-1868476[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0017 0.094 13.5 1.3 2 23 176 197 175 197 0.94 2 12 0.059 3.2 8.7 0.0 5 23 218 237 216 237 0.88 3 12 8.1e-05 0.0044 17.7 1.4 2 23 243 265 243 265 0.95 4 12 0.0059 0.32 11.8 0.4 2 21 280 299 279 300 0.91 5 12 0.0014 0.075 13.8 2.3 1 23 312 335 312 335 0.98 6 12 9e-05 0.0049 17.5 0.3 6 23 346 363 344 363 0.96 7 12 1.1e-05 0.00059 20.4 4.6 2 23 376 398 375 398 0.97 8 12 0.0012 0.065 14.0 2.2 3 23 402 426 400 426 0.89 9 12 0.0012 0.069 13.9 2.9 1 23 461 484 461 484 0.98 10 12 0.028 1.5 9.7 0.8 6 20 495 509 493 513 0.95 11 12 0.00019 0.011 16.5 1.6 2 23 526 548 525 548 0.94 12 12 0.00092 0.05 14.3 0.8 5 23 558 577 556 577 0.95
Sequence Information
- Coding Sequence
- ATGGATAGCAAGGAGCACGGAACACCCAGCTGTGAAACATTGAGTACCACGTCTCCAGAGGCAGTGATGAATCTACAGATATCTACACAAACATTTAAAGTAGAAATTAAAGAGGAAACAACAGCAGAGTGCAGAGATGAAACAGAATCACCTTGCAATGACTATATGCATCCATCTAAGCCCTTAGAATCACCAGAGTATGGAAATTACTATGACAGTAAGATTTATATGTGGGAAGAATTAAAGCAGGAATTCCCTGAGGATGACTGCCCTCAATCAGACTGCAGTATGGATGGTAGAATAGTTTCAGAAAATAGGGAATTATTATCACATACAAACAAGCAAAAAGTAGAAATCGAAAACACAGAGGAGGAATTTTCATTAATTTTAAAGGAAGTAGGAGTGAACAGTAAGTGTAAGTACCAGATTACCATAAAAACGGAGAGGCTAGAAGAGCCAGACATTACGGATAGTTCTGGAGCTACTAGTGTTCATTATGATGTCCTAGTAACACCTCAAGAAGTTAAATGCAAGTTCTGTGCTAGAATATTCAATAATAATTACAATTTATTAAAACACAATAATGACCACATAAAAATTGAAATAAACACACCAGCGGATAATGACATTAATGAGTTGCACCAGCGCCAATATTGTGGGAAAGGTTTTATTAACTATGATAATATGCTTGTACACGTCACTGATGTTCATAGCGAGAATAATCCCAAATGTAAAATATGCGGAAAGCAATTTAATAGCGTAATGAATCTTGAACGTCACTTCAAACTTTCACACAAACTTAAGAAGTTCCAAAAACAAGTAACTGCAAAGGATATGAAATGTATATATTGCAATGCAGCTTTCAAACGTAAATCCAGATTGAATAACCATATAAAGCTATGTCGTATTGGTAAGGAGGATGAGGATATGAAATATAAATGTGCCTTATGCGAGGGTATTTATAAAAGTAAACATTATTTAACAAAGCATATAAATAGGATGCATTATGATTACGGGAGAACGTTTGATTGTTGGTGCGGGAAAGAGTATCGTACACCGGAGTACTTACGTGAGCATATGAGGCGGCATGATGGCAAAATGAAAAATAGAAATAACGCCAAAGTTCAATGTGACTATTGCCATAAGTTTTTTAAAACCAAACACTATTTATTAGTGCATATAAAAACTGTTCATGATGATTATTGTAAATTATTTGAATGTTGGTGCGGGAAACAGTTCCGTACTCCGGTATTTTTAAATAACCATAAGAGACGGCACACTGACGGTAACATTAATGATACAAATAATGTCAAATTATGCAGATTGATTAACCATAATATAAAACTATGTCTTACTGATAAGGAGGATGGGGAAATGAAATATAAATGTGAGTTATGCAAGGGTATTTATAAAAGTAAACATTATTTAATATTGCATATGAAGAGGATGCATTATGATTACGGGAGAACGTTTGCATGTTCATGTGGGAAACAGTTTCGTTCACCAGTACAGTTAAGTCAGCACATGTGGCATGTTCATGGTGGCAAAATGAAAGATAAAAATAAAAGCAAAGTTCAGTGTGACACTTGCCAAAAAATTTTCAAATCCAAATACTATTTATTAAAACACAACAAAAATGTTCATTATGATTATGGCAAAGCGTTCGAATGTTGGTGCGGGAAACAGTTCCGAACGCCGAAACTATTAAATGATCATAAAAGACGGCAGCACGATGGCATCTTTAATGATAAAAATAATGACAAATCCCAAAGTGTCTCTAGTTCTTCCACGTGTTGA
- Protein Sequence
- MDSKEHGTPSCETLSTTSPEAVMNLQISTQTFKVEIKEETTAECRDETESPCNDYMHPSKPLESPEYGNYYDSKIYMWEELKQEFPEDDCPQSDCSMDGRIVSENRELLSHTNKQKVEIENTEEEFSLILKEVGVNSKCKYQITIKTERLEEPDITDSSGATSVHYDVLVTPQEVKCKFCARIFNNNYNLLKHNNDHIKIEINTPADNDINELHQRQYCGKGFINYDNMLVHVTDVHSENNPKCKICGKQFNSVMNLERHFKLSHKLKKFQKQVTAKDMKCIYCNAAFKRKSRLNNHIKLCRIGKEDEDMKYKCALCEGIYKSKHYLTKHINRMHYDYGRTFDCWCGKEYRTPEYLREHMRRHDGKMKNRNNAKVQCDYCHKFFKTKHYLLVHIKTVHDDYCKLFECWCGKQFRTPVFLNNHKRRHTDGNINDTNNVKLCRLINHNIKLCLTDKEDGEMKYKCELCKGIYKSKHYLILHMKRMHYDYGRTFACSCGKQFRSPVQLSQHMWHVHGGKMKDKNKSKVQCDTCQKIFKSKYYLLKHNKNVHYDYGKAFECWCGKQFRTPKLLNDHKRRQHDGIFNDKNNDKSQSVSSSSTC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01317494;
- 90% Identity
- iTF_01317494;
- 80% Identity
- iTF_01317494;