Spav010234.1
Basic Information
- Insect
- Saturnia pavonia
- Gene Symbol
- -
- Assembly
- GCA_947532125.1
- Location
- OX383920.1:1962213-1964832[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.8e-05 0.001 19.7 0.6 1 23 101 124 101 124 0.96 2 12 0.0019 0.1 13.4 0.7 2 21 155 174 154 175 0.91 3 12 2.1e-05 0.0012 19.5 1.6 1 23 187 210 187 210 0.98 4 12 0.027 1.5 9.7 0.6 6 23 221 239 219 239 0.90 5 12 0.00012 0.0068 17.1 2.5 1 23 248 271 248 271 0.98 6 12 8.5e-05 0.0047 17.6 0.9 6 23 282 300 280 300 0.96 7 12 0.00012 0.0066 17.1 2.9 2 23 313 335 312 335 0.97 8 12 0.0015 0.084 13.6 0.6 5 23 345 363 343 363 0.96 9 12 0.00021 0.011 16.4 1.3 1 23 397 420 397 420 0.98 10 12 0.0057 0.31 11.8 2.2 6 23 431 449 429 449 0.94 11 12 0.00014 0.0076 16.9 1.2 1 23 458 481 458 481 0.98 12 12 9.8e-05 0.0054 17.4 0.8 5 23 491 510 489 510 0.95
Sequence Information
- Coding Sequence
- ATGACCATAAAAACGGAGAGCCTAGAAGAGCAAGACATTAATTGTGATAATTCTGGACCGTCTACCGTACATTATAATGTCCCAGTAACTACTCAAGAACTTAAACACAATTTAAGTGGTAGAATATTCAAAAATAATCTCAATTTATTAAAATGCAATGATGAGCACATAAAAATTGAAATAAACACACCGACGGATAATGAATTTAATGAGTTAGACCAGAGCCAACATTTCGAGAAACATTATGATAACTATAATAAAATGCTTACACACGTCACTGATGTTCACAGCGAGAATAATCACAAATGTGAAATATGTGGAATCCGATTTAATAGCGTACCTAATCTCAAAAGTCACATCAAACTTTTACACGAACTTAAGAATTTACCCAATCAAGTACTTAATAATTTACCAAATCAAGTATTTAATAATTTACCAAATCAAGTAACTCCAAACGATATGAAATGTATATATTGCAATGTAGATTTCAAACGTAAATATAGTTTGAATAACCATATGAAGCTATGTCGTATTGGTAAAGAGGATGAGGAAAGTAAATATAAATGTGACTCGTGCGAGCGCGTTTATAAAAATAGAAAGTCTTTAGTAAAACATATAAAAAAGATTCATTATGACTATGGGAGAATGTTTGAGTGTTGGTGCGGGAAACAGTTCCCTTCACCGATACACTTGACTATACATAAGAGCTTGCGACATTATACTAATAAGAAAAATGAATTATACAAATGTAAATTCTGCGAGGCGGTGTATAATATGAAGAACAGTTTAACAAGGCATATGAAGAGAACTCATTATGATTACGGCAGTACGTTTGACTGTTGGTGCGGGAAACAGTTTCGTACACCGCAATACTTACGTGAGCATATGAGACGGCAGCATGGGAGCGAAATGAAAGATAAAAATAACGACAAAGTTCAGTGTGATTTTTGCCAAAAAACCTTCCAAACTAAACACTATTTATTGACGCACATAAAAAGTGTTCATTATGATTATGGTAAAGTATTTGAATGTTGGTGCGGGAAACAGTTTCGTACGCCGATACTTTTAAGCAACCATAAGAGACGGCACCCCAATAGTAACATTAATGATACGAATAATGACAAATTATACAGATTGAATAAACATAAGAAGCTGTGTCGTACTGGTAAGCGGGATGAGGAAATTAAATATAAATGTGACTCATGCGAACGCGTCTATAAAAGTAAATTGTCTTTAACATTGCATATAAAAAGTACTCATTATGACTATGGGAGAACGTTTGCATGTTGGTGCGGGAAACAGTTCCGTACCCCAATACACTTGACTCAACACAAGAGCCGTCAACATGGTACCAATGGGAAAAATGATTTATACAAATGTAATTATTGCGAGAAGGTGTTTCATACGAAACCGGCTATAGCTGAGCATATAAAGAGGATGCATTATGATTACGGAAAAATGTTTGAATGTTGGTGCGGGAAACAGTTTCGTACACCGAAGTACTTACGTGAGCATATGAAGCGGCAGCATGATGGCAAAAAGCAAAATTGA
- Protein Sequence
- MTIKTESLEEQDINCDNSGPSTVHYNVPVTTQELKHNLSGRIFKNNLNLLKCNDEHIKIEINTPTDNEFNELDQSQHFEKHYDNYNKMLTHVTDVHSENNHKCEICGIRFNSVPNLKSHIKLLHELKNLPNQVLNNLPNQVFNNLPNQVTPNDMKCIYCNVDFKRKYSLNNHMKLCRIGKEDEESKYKCDSCERVYKNRKSLVKHIKKIHYDYGRMFECWCGKQFPSPIHLTIHKSLRHYTNKKNELYKCKFCEAVYNMKNSLTRHMKRTHYDYGSTFDCWCGKQFRTPQYLREHMRRQHGSEMKDKNNDKVQCDFCQKTFQTKHYLLTHIKSVHYDYGKVFECWCGKQFRTPILLSNHKRRHPNSNINDTNNDKLYRLNKHKKLCRTGKRDEEIKYKCDSCERVYKSKLSLTLHIKSTHYDYGRTFACWCGKQFRTPIHLTQHKSRQHGTNGKNDLYKCNYCEKVFHTKPAIAEHIKRMHYDYGKMFECWCGKQFRTPKYLREHMKRQHDGKKQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01317497;
- 90% Identity
- iTF_01317497;
- 80% Identity
- iTF_01317497;