Spav001815.2
Basic Information
- Insect
- Saturnia pavonia
- Gene Symbol
- -
- Assembly
- GCA_947532125.1
- Location
- OX383907.1:16578626-16596417[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.4e-10 1.9e-07 30.9 0.0 4 39 179 215 177 219 0.90 2 4 1.8e-11 8e-09 35.3 0.2 2 39 231 268 230 272 0.92 3 4 6.5e-15 2.9e-12 46.4 0.0 2 45 286 330 285 330 0.96 4 4 2e-16 8.9e-14 51.2 0.0 2 42 338 379 337 381 0.94
Sequence Information
- Coding Sequence
- ATGAGTGAGCGCAGTCTAAAGCCAGTGAAACGCGAGCCGCTTCCAGAAGAGCAGGACGCTGAATTGCATTACTCACACAACTGTCTCACAAATCAGGTACATTTTAACGAAGTTAACGTCGAAAACATAAAGTTGGAGTCCGTGTGCCAAAGTCAAGATGTTTCGACGAATCTTTTACATCATTTACATAGTTCTAGCCCATTGGAAGACTTAGCACCGTTAGCGCCGGCTGGACCTGCTGCTACTCCGGTCTGTATTAAACAAGAGCCTGCTGATACTCCACCTACAGTCACCTTGGAAACTCTGGAGTCAGCGTCACATAACTCAGCGGGCTCTACATTTATGAGTAGACATATGGAGGTGCATTTGAATGAAACTTCAAACGCAGCTAGCTTCACGTCGCTGATAACAGTTAAAGACGAACCGTCATCTGAAGGAGAACAACATCATTTCAGCGGTGAAGATACGAATGATTCGTGCAGTACCCAACCTGAAACTGTGACGCGAGGCAGCCCTAAGAGTTGGAATCAGCAAGATATGGAAAACGCACTCGACGCCCTACGAAAGCATAATATGAGCCTCACCAAGGCTTCTGCGACTTACGGCATACCGTCTACAACTCTCTGGCAGCGAGCTCACAGGCTGGGCATCGATACTCCGAAAAAGGAAGGGGCTTCGAAGTCATGGAGTGAAGCAGATTTGAAGGGAGCTCTTCAGGCATTAAGAACTGGCGCTATATCAGCTAACAAAGCCAGCAAAGCATACGGGATACCTAGCAGCACGCTGTACAAGATAGCTCGGCGTGAGGGCATTCGGCTGTCAGCGCCGTTCAACGCAGCTCCGACTGCGTGGCGGCGCGCCGACCTGCGTCTCGCGCTTGCCTCGATCCGCTGCGGTGCCTGCTCCGTGCAGCGAGCCGCCTCACACTACGGAATACCTACAGGAACACTCTACGGCCGATGCAAACGAGAGGGGATCGAACTGTCCCGAACCAATCCGACACCCTGGTCTGAAAACGCGATGGTGGAAGCCCTCGAGGCTGTGAGAATTGGTCAGATGTCAATTAATCAAGCTGCTATACATTTCAATTTGCCATATTCATCGCTGTATGGAAGATTCAAAAGGTGCAAGTATCAAAACCAGGTTATTCAAAGAAATCAACAACAGGACCTTTCTAAATCTCAAGAAACGGAGCTTCACATCCAGGATGTTTCTCACTACCAGCACACACAGCCTCAAATCATACATCCATCAGTTTATGAGAATCATGCGCATTCGCCGTACACTGTCGCACAACAATATGTACACGAAGATACCTCAAACGTGCACGATTACAGTCAGGGAGTATTCTTCAATCAAAACTTCAATAGTATAGTTACAAGCTGA
- Protein Sequence
- MSERSLKPVKREPLPEEQDAELHYSHNCLTNQVHFNEVNVENIKLESVCQSQDVSTNLLHHLHSSSPLEDLAPLAPAGPAATPVCIKQEPADTPPTVTLETLESASHNSAGSTFMSRHMEVHLNETSNAASFTSLITVKDEPSSEGEQHHFSGEDTNDSCSTQPETVTRGSPKSWNQQDMENALDALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLKGALQALRTGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLRLALASIRCGACSVQRAASHYGIPTGTLYGRCKREGIELSRTNPTPWSENAMVEALEAVRIGQMSINQAAIHFNLPYSSLYGRFKRCKYQNQVIQRNQQQDLSKSQETELHIQDVSHYQHTQPQIIHPSVYENHAHSPYTVAQQYVHEDTSNVHDYSQGVFFNQNFNSIVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01316230;
- 90% Identity
- -
- 80% Identity
- -