Sjap016672.1
Basic Information
- Insect
- Saturnia japonica
- Gene Symbol
- -
- Assembly
- GCA_033032175.1
- Location
- CM065315.1:20096494-20108861[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.4e-10 2.7e-07 31.4 0.0 4 39 179 215 176 219 0.89 2 4 1.2e-11 6e-09 36.7 0.2 2 39 231 268 230 272 0.93 3 4 1.1e-14 5.6e-12 46.4 0.0 2 45 286 330 285 330 0.96 4 4 3.4e-16 1.7e-13 51.2 0.0 2 42 338 379 337 381 0.94
Sequence Information
- Coding Sequence
- ATGAGTGAACGCGATCTGATACCAGTGAAATGCGAGCCACTTCCAGAAGAGCAGGACGCTGAATTCCATTACTCAATTAACTGTTTTTCCAATCAGGTACCTTTAAACGAAGTTAGTATCGAAAACATAAAGTTGGAATCCGCGTGCCGTAGTGAAGATGTGCCGACGAATTTTTTACATCATTTACATaGTTCTAGCACATTGGAAGAGTTAGCACCGTTAGCGCCGGCCGGTCCTGCTGCTACCCCGGTCTGTATTAAACGAGAGCCCGCTGATACTCCACCTGCAGTTACCTTGGAAACTCTGGAGTCAGCTTCTCATAACTCAGCGgGCTGTACATTTATGAGTAGACATATGAAGCTGCAGTCAAATGAAACTTCAAACGCAGCTAGCTTCACGTCCCTGATGATAGTTAAAGATGAACCGTTATCTGAAGGAGAACAACATCATTTGAGCGGTGAAGATACGAATGATTCGTGCAGTACCCAACCTGAAATTGTGACACGCGGCAGCCCTAAGAGTTGGACCCAGCAAGATATGGAAAACGCACTCGACGCCTTACGAAAGCATAATATGAGCCTTACCAAGGCTTCTGCGACATACGGAATACCTTCTACAACTCTCTGGCAGCGAGCTCACAGGCTGGGCATTGACACTCCGAAAAAGGAAGGGGCTGCGAAGTCATGGAGCGAAACAGATTTGAAGGGAGCTCTTCAGGCATTAAGAACTGGTGCTATATCAGCTAACAAAGCCAGCAAAGCATACGGTATACCAAGCAGCACACTGTATAAGATAGCTCGGCGTGAGGGTATTCGGCTGTCTGCACCGTTCAATGCGGCTCCGACTGCGTGGCGACGCGCCGATCTGCGTCTGGCACTGGCGTCCATCCGCTGCGGTGCCTGCTCCGTGCAGCGAGCCGCCTCTCACTACGGCATACCTACAGGAACACTCTACGGCCGATGCAAGCGAGAGGGGATCGAATTGTCTCGGGCCAATCCGACGCCCTGGTCTGAAAACGCGATGGTAGAAGCCCTCGAGGCTGTGAGaATTGGTCAGATGTCAATTAATCAAGCCGCTATACATTTCAATTTACCATATTCATCGCTGTATGGAAGATTTAAAAGGTGCAAATACCAAAACCagGTTATTCAAGCGACTCAACAACAAGACCACTCTCTATCTCAAGAAGCGGAGCGACACATCCAAGATATTCCTCACTACCAGCCCACGCAGCCTCACACCACACATCCATCAGTTAACGACAATCATGTACATTCGCCGTGCACTGTCGTCCAACAATATGTACACGATGACACATCAAGCGTGCACGATTACACTCATTCATTTTTCAATCAAAACTTCAACAGTATAGTTACAAGCTGA
- Protein Sequence
- MSERDLIPVKCEPLPEEQDAEFHYSINCFSNQVPLNEVSIENIKLESACRSEDVPTNFLHHLHSSSTLEELAPLAPAGPAATPVCIKREPADTPPAVTLETLESASHNSAGCTFMSRHMKLQSNETSNAASFTSLMIVKDEPLSEGEQHHLSGEDTNDSCSTQPEIVTRGSPKSWTQQDMENALDALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSETDLKGALQALRTGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLRLALASIRCGACSVQRAASHYGIPTGTLYGRCKREGIELSRANPTPWSENAMVEALEAVRIGQMSINQAAIHFNLPYSSLYGRFKRCKYQNQVIQATQQQDHSLSQEAERHIQDIPHYQPTQPHTTHPSVNDNHVHSPCTVVQQYVHDDTSSVHDYTHSFFNQNFNSIVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01317195;
- 90% Identity
- -
- 80% Identity
- -