Sjap031892.1
Basic Information
- Insect
- Saturnia japonica
- Gene Symbol
- Zfx
- Assembly
- GCA_033032175.1
- Location
- CM065329.1:11917258-11921193[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 5.3e-05 0.0058 18.2 0.9 2 21 111 130 110 131 0.94 2 18 0.056 6.1 8.7 0.1 3 23 164 185 162 185 0.94 3 18 1.5e-05 0.0016 20.0 0.5 1 23 190 212 190 212 0.97 4 18 4.4 4.8e+02 2.8 7.0 1 21 215 235 215 236 0.95 5 18 0.0017 0.19 13.5 0.3 1 23 248 271 248 271 0.94 6 18 4.7e-06 0.00052 21.5 3.6 1 23 277 299 277 299 0.99 7 18 3 3.3e+02 3.3 0.3 1 23 333 356 333 356 0.75 8 18 4.5 4.9e+02 2.7 0.6 1 16 364 379 364 380 0.88 9 18 0.00011 0.012 17.2 1.3 2 21 481 500 480 501 0.93 10 18 9.8 1.1e+03 1.6 0.1 3 23 508 529 507 529 0.86 11 18 0.17 19 7.2 1.1 3 23 536 557 535 557 0.96 12 18 4.2e-05 0.0046 18.5 2.0 1 23 562 584 562 584 0.98 13 18 0.55 60 5.6 1.8 2 20 588 606 588 608 0.91 14 18 7.8e-07 8.5e-05 24.0 0.4 1 23 634 657 634 657 0.96 15 18 0.00054 0.059 15.0 0.3 1 23 663 685 663 685 0.95 16 18 0.15 16 7.4 0.1 1 23 691 713 691 713 0.96 17 18 0.0054 0.59 11.9 2.1 1 23 719 742 719 742 0.94 18 18 0.00085 0.093 14.4 3.2 2 23 749 771 748 771 0.94
Sequence Information
- Coding Sequence
- ATGGTGGACGAGACGGTCCTGCCGCGGGGTCTCTGCCGACGATGTTCCGAAGACACAATTACATCATTCCACTTCAGAGAACTATGCCTCCAATCGAACATCCAATGGGAAAAGACCACTACATGTTTTGCCAACATACAAGAACCCACAGATTCTGACAAAACATTATATGTGTTCTTCGGTAATGACATCTCAATGGTCACTGATCAGGTTAATGTAGCATCAAATCCAGATGAAGCGTTGAATAAACTGAATAATAAATTCAGAGAACCGCAAGTGACAGAGAAGCCCACACGAAGAGCTAAACGCATTTTCGAACTAATAAATTGCGTGTGTCCGGATTGTGGGATGAACTTTACTAATCCTGAATTTCTCAACCATCATCTTCGAAATTCATTGAAAAGAGCTTGTAGGAAATGTGGTAGCGTTGTACCAAAGAACAGTTTGCATAAGCATCTATTGGGAATTCACGGAATAACCGTAATAGATTGCTACGTATGTAACGCGGTGTTCAACGAGCAAAATGAATTTGAGCAGCATTGGTTATCGACACACGGTCCGAACACGTTTTCCTGCGGCTATTGCGGCTTTGGTTTCAACAACAGCAGGGCGCTGCGAGCCCACATGTACTCTCATACGCTGTTCTATTGCAAATCCTGCAATAGCAGCTTCTACAATAGACAATGTTTCAAATATCACCAAAAGCAGTGTAAAATCAAAGCGGAACCCAAACAATCCGTATTCATATGCGATTATTGCAATATAGAGTACAATAAGAAGCCATCTTTAAAGGTACATATAATACAAAAGCATCTTAATGTGCTGCCGTTTACTTGTCAAGAGTGCGGGAAGCGAACGTCGACGCTTGGCCATTTGAAGTCTCACCAAAAGACTCACAGGGAAGAGCGGAAAATCTTCCAATGTTATTGTGGAGCAAAAATGCGCACGGAACTGGGTTATCAGTTGCATCAGAGAATCCATACCGGAGAACGTCCTTACGAGTGTGAGATTTGTGGAGATCGATTCCTTTCAGCGTCTAGACGACTGGATCATGTGAAGCGAAGGCACAGGGGCACGACGGAAATGCCACATGCTTGTGACAAATGCTCTGCTAGATTTATTCACGAAGAGTCACTATGCCCAAAAGGCGCATGCGTTAATTGTGTAAGCGCTGCGCTAGCGGCCGGCGAATTCCGCACTTTCGTTCAATCATCACAGAAAGTGTGGACGAAAGCAGTAAACGGTCTCAACGCCTTGCCATTCACTGTTTCGACCCCAATGAAATCCTTATGTGCGTTCATACATCCAAACGACATTGTCATACAAACGGTAAAAGACTACGCCAGCGATCCCAAAACGATACTCGACAGGCTGAGGGCGGTTGTGACTAAAAAACCTGTTAGGAGAAAACCGCGGAACGACCGTGCGGGGCCATCTTGTAGTTGTCCGGACTGTGAGAAAATATTTTCGAGTCCTCACCACTTAGCTATGCACTTAATGAATAGTGGGCAAAAGGAAGCGTGCGTCATATGTGGAGAGGTTATCCTTCGCGGTGAGAAAATGAAGGAACATATGAAATCGGTACACGGCACCGACGTGCTCCTATGTACCGATTGTCCCTTATTATTTCCCGAAAAAACTCACTTGGCTGAACACGTAGCGAGGTGTCACAAACCTGGCTCCTTCACGTGTACGGACTGCGGGAGGAGTTTTCCTAGAAAGGTGACGTTTGATCACCATGCCCAAATGCATATGGTGCGTACATGTAGGGCGTGCGGGACTCAGTTCACGAACCGAGGCTGTTATAGAGAGCACAGGTCTCAGTGTGAACCGGACGCGAAGCCTGACCTCACGCAGTTACCTCGCAATCGCAGATCGAACATTCGCGATTTGGCCAACTACACGTGTGACTATTGCGGTAAAACGTACACGTCTCGACCGCAATTGAAAAACCATATATTATGGATCCACATGGACGTTAGGCCTCACGAATGTCAATGGTGCGGGAAGCGGTTTTACACGCCGGCCCGCCTCGCGGAGCATACGGTCGTACACACGCGCGCTAGGAACTTCGAATGTGATATATGTGGAGTGAAATTAGTGACTAGGATGGCCGCAGTGTATCACAAGCGACGTCATACAGGCGAGAAGCCGTACAAGTGTGAAGATTGTGACGAGTGTTTCATATCGGCGTCGCGGAGAAGCGAGCACGCCAAACGGAAGCACAACAAAGGGGTTAAGTTGCACTGTGTACAATGTACGGCGTCTTTTGTAAGGAAACACGAGCTAAAGAAACATATGGACCGGGCGCATTCGGTACAAGGACTGTTTTATATAACCGAAATTAATTGA
- Protein Sequence
- MVDETVLPRGLCRRCSEDTITSFHFRELCLQSNIQWEKTTTCFANIQEPTDSDKTLYVFFGNDISMVTDQVNVASNPDEALNKLNNKFREPQVTEKPTRRAKRIFELINCVCPDCGMNFTNPEFLNHHLRNSLKRACRKCGSVVPKNSLHKHLLGIHGITVIDCYVCNAVFNEQNEFEQHWLSTHGPNTFSCGYCGFGFNNSRALRAHMYSHTLFYCKSCNSSFYNRQCFKYHQKQCKIKAEPKQSVFICDYCNIEYNKKPSLKVHIIQKHLNVLPFTCQECGKRTSTLGHLKSHQKTHREERKIFQCYCGAKMRTELGYQLHQRIHTGERPYECEICGDRFLSASRRLDHVKRRHRGTTEMPHACDKCSARFIHEESLCPKGACVNCVSAALAAGEFRTFVQSSQKVWTKAVNGLNALPFTVSTPMKSLCAFIHPNDIVIQTVKDYASDPKTILDRLRAVVTKKPVRRKPRNDRAGPSCSCPDCEKIFSSPHHLAMHLMNSGQKEACVICGEVILRGEKMKEHMKSVHGTDVLLCTDCPLLFPEKTHLAEHVARCHKPGSFTCTDCGRSFPRKVTFDHHAQMHMVRTCRACGTQFTNRGCYREHRSQCEPDAKPDLTQLPRNRRSNIRDLANYTCDYCGKTYTSRPQLKNHILWIHMDVRPHECQWCGKRFYTPARLAEHTVVHTRARNFECDICGVKLVTRMAAVYHKRRHTGEKPYKCEDCDECFISASRRSEHAKRKHNKGVKLHCVQCTASFVRKHELKKHMDRAHSVQGLFYITEIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01312407;
- 90% Identity
- -
- 80% Identity
- -