Sric017370.1
Basic Information
- Insect
- Samia ricini
- Gene Symbol
- ZFX
- Assembly
- None
- Location
- BLXV01000022:3286166-3297549[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.1e-05 0.0014 19.1 0.8 2 21 173 192 172 193 0.94 2 17 0.37 25 5.8 0.9 3 23 199 219 198 219 0.92 3 17 0.086 5.7 7.8 0.1 3 23 226 247 224 247 0.94 4 17 2.5e-05 0.0016 18.9 2.4 1 23 252 274 252 274 0.97 5 17 0.0017 0.11 13.2 0.5 1 23 310 333 310 333 0.95 6 17 2.1e-05 0.0014 19.2 1.3 1 23 339 361 339 361 0.97 7 17 7.1 4.7e+02 1.8 0.4 1 23 395 418 395 418 0.74 8 17 0.00047 0.031 14.9 0.7 1 23 426 449 426 449 0.94 9 17 0.0013 0.088 13.5 0.5 2 21 559 578 558 579 0.92 10 17 0.0042 0.28 11.9 1.2 3 23 614 635 613 635 0.96 11 17 0.00014 0.0093 16.6 2.1 1 23 640 662 640 662 0.98 12 17 0.48 32 5.4 1.8 2 20 666 684 666 686 0.91 13 17 6.6e-07 4.3e-05 23.9 0.4 1 23 712 735 712 735 0.96 14 17 0.0061 0.4 11.4 0.7 1 23 741 763 741 763 0.95 15 17 0.047 3.1 8.6 0.1 1 23 769 791 769 791 0.97 16 17 0.0027 0.18 12.5 1.7 1 23 797 820 797 820 0.94 17 17 0.00052 0.034 14.8 3.5 2 23 827 849 826 849 0.94
Sequence Information
- Coding Sequence
- atgaatcggcaagtggacgtaaaggccttaatttctcatatagttagcggtgatggcgctgacaaatgccgtatatgtttgggggatacaacagaaggacgagttttcctcggcgatactgttatgatgcacggagataaggcagtaaccctcgccgagctcttggaaacgataacgggagttgaggtggtggacgagacggtcctgccgtggggtctctgccggagatgtttcgaagatacaattacagccttccacttcagacagctatgtctccaatcgagctctcaatgggaaaaggcctctacgtgttttaacaacgtacaatacgctacagatactgacaaaacactatacgtgttctttggtgaagaaatctcgatattaactgatcaaatcaatgtcgcatcaaatccaaaggaagcggtggacaaattaaataataaattcacagaaccacaagttgaagagaaaccaactcgtaaatctaaacgcattttcgaagtaataaactgcgtgtgtccggattgtggaaagaattttaagaatcctgaattcttgaactatcatcttcgaaattcactgaaaagcgcttgtaggaaatgcggtaccgtagtagcaaagagtaatttgcacaaacatctattggaaactcacggaataaatgtaatagattgctacatatgtaacgcggtgttcaatgaattaaaagaattcgaacagcattggatatcgacacacggtccgaacacgcattcatgtcactactgcggtgctggcttcaataatagcagggcgctgcgagctcacatgtactctcacacgctattccattgtaaatcctgcaagagtagctttaacaatcggaagtgtttcaaatatcatcagaaacagtgcaaaatcagagacgaaccagaacagtctgtattcgtttgcgattactgcaagatagagtacaataagaagccatcgttaaagatacatataatacaaaagcatctgaatgtattaccgtttgcttgtcaagagtgtgggaagcgagcgtcgacgctcgggcatttgaagtcacatctaaagacgcatacagagcagcggaaaattttccaatgttactgtggggcaaaaatgcgtacggaactcggttaccagttgcatcagagaatccataccggggaacgtccctacgaatgtgaaacatgcggggatcgattcctttcagcgtccaggcgactggatcacgtgaagcgaaggcataagggcacaatggagatgccacacgcatgtgacaaatgttccgccagatttataaggccttgggaattgaagaagcattatttatcggtccatttcgatattcacgaagagtctctatgtccaaaaggcgcgtgcgttaattgtgttagcgctgcgctggcggccggcgagttccgagctttcgttcagtcatcgcagaaagtttggactaatgcaataaacggtctcaacgccttaccctacactgtttcgtccccgatgaagtcattatgcgctttcgtgcatccaaacgacttgatcatacacacagtcaaagactatgctagtgatccgaaatcaatacttaataggctgagggcagtcgtgaccaaaaaacctgtcaggagaaaaccacgaagcgaccgagccgggccgtcgtgcacttgtccagattgtgggaaaatgttcctaagccctcattacttagcgatacacttaatgaatagcggccagaaggaagcctgcgttatctgcggggcggttgtcctccgtggcaagaaaatgaaggaccatatgaaactggcacataaaaccgacgtcctcttgtgcagtgactgtccgttaatgtttcccgaaaagtcacacctcgctgaacacgttgagaggtgccacaaacccggttctttcacttgcacggactgcgggaggaatttccccagaaaggtgaccttcgatcaccacgcgcaaatgcacatggtgcggacgtgtagggcgtgtgggacgcagttcacgaatcgcggctgttacagagagcataggtctcaatgtgaaccggaggcgaagcctgacgtcacaatgctccctcgtaatcgtagatcgaacgtgcgcgatttggccaactacacgtgtgattattgcggtaagacgtactcgtctcggccgcaattgaagaatcatatattatggatacatatggacgtaaggcctcacgagtgccaatggtgtagaaagcggttctatacgccggcccgtctcgcggaacacaccgtcgttcacacgcgcgcgagaaacttcgaatgcgacatatgcggagtgaagttagtgacaaagatggccgctatatatcacaagcgacggcacacgggcgagaaaccgtacaggtgtgaagattgcggcgaatgtttcatatcagcgtcacggagaagcgagcatgccaaacggaagcacaacaaaggagctaaactgcactgcacacaatgtacggcctctttcgttaggaaacacgagttgaaaaaacatattgatcgagcgcactcaattcaagaattatattatataacagaagtcaattaa
- Protein Sequence
- MNRQVDVKALISHIVSGDGADKCRICLGDTTEGRVFLGDTVMMHGDKAVTLAELLETITGVEVVDETVLPWGLCRRCFEDTITAFHFRQLCLQSSSQWEKASTCFNNVQYATDTDKTLYVFFGEEISILTDQINVASNPKEAVDKLNNKFTEPQVEEKPTRKSKRIFEVINCVCPDCGKNFKNPEFLNYHLRNSLKSACRKCGTVVAKSNLHKHLLETHGINVIDCYICNAVFNELKEFEQHWISTHGPNTHSCHYCGAGFNNSRALRAHMYSHTLFHCKSCKSSFNNRKCFKYHQKQCKIRDEPEQSVFVCDYCKIEYNKKPSLKIHIIQKHLNVLPFACQECGKRASTLGHLKSHLKTHTEQRKIFQCYCGAKMRTELGYQLHQRIHTGERPYECETCGDRFLSASRRLDHVKRRHKGTMEMPHACDKCSARFIRPWELKKHYLSVHFDIHEESLCPKGACVNCVSAALAAGEFRAFVQSSQKVWTNAINGLNALPYTVSSPMKSLCAFVHPNDLIIHTVKDYASDPKSILNRLRAVVTKKPVRRKPRSDRAGPSCTCPDCGKMFLSPHYLAIHLMNSGQKEACVICGAVVLRGKKMKDHMKLAHKTDVLLCSDCPLMFPEKSHLAEHVERCHKPGSFTCTDCGRNFPRKVTFDHHAQMHMVRTCRACGTQFTNRGCYREHRSQCEPEAKPDVTMLPRNRRSNVRDLANYTCDYCGKTYSSRPQLKNHILWIHMDVRPHECQWCRKRFYTPARLAEHTVVHTRARNFECDICGVKLVTKMAAIYHKRRHTGEKPYRCEDCGECFISASRRSEHAKRKHNKGAKLHCTQCTASFVRKHELKKHIDRAHSIQELYYITEVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01316605;
- 90% Identity
- -
- 80% Identity
- -