Sjap005841.1
Basic Information
- Insect
- Saturnia japonica
- Gene Symbol
- -
- Assembly
- GCA_033032175.1
- Location
- CM065307.1:13160700-13161209[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.3e-08 3.2e-05 24.8 0.0 17 41 1 25 1 27 0.93 2 2 3.8 1.9e+03 -0.1 0.0 27 44 86 104 85 104 0.89
Sequence Information
- Coding Sequence
- aTGGGTATAAGAGAAGCCTGCCGGATATATGGCATACCAAAAACAACAGTACATGATCGTATCTCAGGCAAAGTTGCCGATAATAAGAAACCAAAAGTTGGCCCTGACCCTATTTTAGGCTGTGAcggagaaaaaaaattgaagactTGGGTGCTGGACATGGCTAAATGTGgctttcttataaataaaaaagaattactcGAAAGCGTTGCTAAAATAATACGAGATACCCAAATTAAAAATCCTTTTAAGAATGGTGTCCCTGGAGACACATGGTACCAAGCTTTTTTAAAACGACATCCCGATGTAAGTGTTAGGGAGCCGGAGGGAATAAATAACGCACGAGCAGCAGTAACGGAGAATCGAGTCAGATTGTGGTTTAAGGACCTAAAAGAATATGTCAAATCCATAGACGCGCTTGAAATATTTGATGATCCTACGAGGATATTTAATGGAGACGAGACGGGGTTTTCGCTTTACCCAAAAAGTGGCAAAGTTTTAGGGCTATAA
- Protein Sequence
- MGIREACRIYGIPKTTVHDRISGKVADNKKPKVGPDPILGCDGEKKLKTWVLDMAKCGFLINKKELLESVAKIIRDTQIKNPFKNGVPGDTWYQAFLKRHPDVSVREPEGINNARAAVTENRVRLWFKDLKEYVKSIDALEIFDDPTRIFNGDETGFSLYPKSGKVLGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00212396;
- 90% Identity
- iTF_00212396;
- 80% Identity
- -