Sjap009034.1
Basic Information
- Insect
- Saturnia japonica
- Gene Symbol
- Rfx2
- Assembly
- GCA_033032175.1
- Location
- CM065309.1:19807063-19823190[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.00035 7.5 8.5 0.4 3 31 89 117 87 122 0.90 2 3 7e-32 1.5e-27 97.2 0.6 16 78 123 185 117 186 0.95 3 3 0.88 1.9e+04 -2.4 0.0 24 32 527 535 511 543 0.68
Sequence Information
- Coding Sequence
- ATGGCAATAGATTGGTTATTGTGTGTTCCCAGGGAGACTCTGCGGTCTTACCCGGTGTACGGTGTGACGAGTGTCGGGGGTGCGGCCGGCGCTGAAGGCACCTCCGCTGACACCGGCTGGGCCGCACCCGCGTCCGCTGACTACACCGCATATGGAGTCGTGGTAGCGAGTGGCGGTGCTGAGGGCGGCGAGGTTGATGAAGGTGAACAGGAGGCGGGGTCTCCGCCAGGCACGCCGGGGGTTCCGCCCCCGCGCATGCCGCCCGCGACTGTCCAGTGGCTGCTCGACCACTACGAAACTGCTGAAGgctacagagcgtaccaaagaaatagctACGCtaaatacatacactcgaaaaacataaccccagctgTGTCATTACCGCGGTCGACGTTGTACGCGCACTACCTTCGGCATTGCTCGGCGCACCGGTTGGAGCCAGTGAACGCTGCCTCGTTCGGCAAGTTGATCCGCTCCGTGTTCGTGGGGCTGCGCACGCGCCGCCTCGGCACGCGCGGCAACTCCAAGTACCACTACTACGGCATCCGCGCCAAGCCGACCGCCAACGGTGACCACGAGCCGCCGCCCCTCCACACCGACAATCATGAAGATAACAACGATGCCGATTCACAGGAAGCAAGGTCGATGTCGAAGGATGGCGACTGCATCGGCAGCCCCGTGGGCAACAGCGGTGCCCACCGACAGTATCTAGGGTCGGTGACCGCTCCAGAACCCCCAGAGTTGCTGGTGTCAGACCTGCCTGATGACATCCCGCACTCGGCGCTGCAGGCTCTTAGAACACATCACCGAGAGCACGGCGTGGAGTTCCTCGAGGCGGTGGGTGCGCTCGACACGGGGGCGGTGGAGCGCGCGCGCCGCGGGTTTTGGCGTCGCGGGGCCGTTGGGGGCGGCGCGGGGGATCTCTGCCGGCGCACGTTGTGGCGGCTGGCGGGTCGCGCCGACGTGGCGCGGTGGCTGCGCGCTGCAGACCTGCAGCTGCATCAGCGCGCCGTCGAGCTGCTTCTGCCCGATGTACTGCGCCCGATCCCACCGCATCTCACACAGGCGATCCGCAACTTCGCGAAGAGCTTGGAGGCCGCACTCGCGGCCGGGGCGGGTGGTGTACCGGCGCGGGCTGCACGGGCGCAGGCGGCGGCGGCCAGTGCCCTAGCGGCGGCGCTGCGCCGGTACACCTCGCTGAACCACCTCGCGCAGGCCGCGCGCGCCGTCCTCACCAACCACCACCAGATACACCAGATGCTGGCGGATCTGAACCGCGTCGACTTCAGGGTGGTGCGCGAGCAAGCCGCGTGGGCGTGCTCTTGCGGCAGCGCAGTCACCGTACACAGGCTCGAGACTGATTTTAAGGCGACGCTGGGGCGGGGCGCGACGCTGGAGCAGTGGGCGAGCTGGCTGGAGGGGTGCGTGCGCAGCGCGCTCGCGCCGCACGAGCGTCGCGCGGACTACACGGCGCGCGCGCGTCGCCTGCTGCTCGACTGGTCCTTCTACTCTTCGCTCGTCATCCGCGAGCTCACGCTCAGGTCGGCTGCGTCGTTCGGTTCGTTCCACCTGATCCGGTTGCTATACGACGAGTACGTGTCCTACCTGATCGAGAGGCGTGTTGCGGCGCACCGGCGCGCTCCGCCCATAGCCGTCATGCAACGCGCTCTGgACGATGACGATGATCTGTTGGAGGAGAACCCCCGAGCTGATGGCGAAGATGACGACCAGGACCAGGACTGGGACTGGGGGGACGACGATGATGATGAAGACGACACCATCGACAGCAAGAAACCAAAGATGCACTGCGAATAA
- Protein Sequence
- MAIDWLLCVPRETLRSYPVYGVTSVGGAAGAEGTSADTGWAAPASADYTAYGVVVASGGAEGGEVDEGEQEAGSPPGTPGVPPPRMPPATVQWLLDHYETAEGYRAYQRNSYAKYIHSKNITPAVSLPRSTLYAHYLRHCSAHRLEPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKPTANGDHEPPPLHTDNHEDNNDADSQEARSMSKDGDCIGSPVGNSGAHRQYLGSVTAPEPPELLVSDLPDDIPHSALQALRTHHREHGVEFLEAVGALDTGAVERARRGFWRRGAVGGGAGDLCRRTLWRLAGRADVARWLRAADLQLHQRAVELLLPDVLRPIPPHLTQAIRNFAKSLEAALAAGAGGVPARAARAQAAAASALAAALRRYTSLNHLAQAARAVLTNHHQIHQMLADLNRVDFRVVREQAAWACSCGSAVTVHRLETDFKATLGRGATLEQWASWLEGCVRSALAPHERRADYTARARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVSYLIERRVAAHRRAPPIAVMQRALDDDDDLLEENPRADGEDDDQDQDWDWGDDDDDEDDTIDSKKPKMHCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -