Ssub020298.1
Basic Information
- Insect
- Sarcophaga subvicina
- Gene Symbol
- Aef1
- Assembly
- GCA_936440885.2
- Location
- CAKZFJ020000246.1:791814-792910[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0078 67 4.6 0.2 22 48 194 220 182 224 0.85 2 4 3.9e-05 0.33 12.0 0.0 21 51 221 251 218 252 0.88 3 4 0.0075 65 4.7 0.0 21 52 249 280 247 281 0.88 4 4 0.0002 1.7 9.8 0.1 21 47 277 303 275 310 0.88
Sequence Information
- Coding Sequence
- ATGCATATTAAAAGTCTGCAACATGCTCATGCTGCTGCAGCAGCGGCAGCATCCATGCCAAATTGTGAAATTGTAATCGTATCATCTTCGcctaatcataataataataataacaacaacaacaataataacaatgaaagtACAAATGGGGGATCTAGTAATGGTAGTGGCAGTGGTGGCAACATTACCGTCGGTGGTAATAACGGccatcaacagcagcaacaacagcaacaaggtTCCTCAGCGACAGCAACAACTGAGATTCCAATACCATTTATGCATTTGGCAGGTGTATCAGCCGAAGCACATGCCGCTGCTCAAGCTGCTGCAATGGCAGCTGCCCAAGCTGCAGCCGCTCAGGCAGCAGCTGCTGAACAAAACGGCAACAATGCACCACCACCGGGCAGTGCCCTGGCCCATCATCATGCCATATTGCAGCAACACCCCTTGGCCCACTTAGTGGCTACGGCTGCGCATAGTCCTGCTCTATCCGAACAACACTTTATAGCCCGCGATGCTACCGTCTTGACTAATGGCCACAATGGCAATTCAACGTCGGCATCGGGTGCACCTGCCCCCGAGAAACCTTTTCAATGTAATGTCTGCGAAAGACGATTCCGCCAATTGAGTACTCTCACGAACCATGTGAAAATCCATACTGGAGAAAAACCGTACAAATGTAATGTTTGTGATAAAACCTTTCGTCAATCGTCCACTCTGACTAATCACTTGAAAATCCATACCGGTGAGAAGCCATTCAACTGTACCTATTGTCCGAAACATTTTCGTCAATTGAGTACACtaacaaatcatttaaaaattcacacAGgtgAAAAACCCTTTGAATGTGCCGTTTGTAAAAAACAATTCCGTCAGTCTAGTACTCTGAATAATCACATAAAAATCCATGTTATGGATAAGGTTTACGTGCCCGTTAAGATCAAAACTGAGGAAGAGGAAGGGTGA
- Protein Sequence
- MHIKSLQHAHAAAAAAASMPNCEIVIVSSSPNHNNNNNNNNNNNNESTNGGSSNGSGSGGNITVGGNNGHQQQQQQQQGSSATATTEIPIPFMHLAGVSAEAHAAAQAAAMAAAQAAAAQAAAAEQNGNNAPPPGSALAHHHAILQQHPLAHLVATAAHSPALSEQHFIARDATVLTNGHNGNSTSASGAPAPEKPFQCNVCERRFRQLSTLTNHVKIHTGEKPYKCNVCDKTFRQSSTLTNHLKIHTGEKPFNCTYCPKHFRQLSTLTNHLKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVMDKVYVPVKIKTEEEEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00655752;
- 90% Identity
- iTF_00200414;
- 80% Identity
- iTF_01315820;