Ssub012413.1
Basic Information
- Insect
- Sarcophaga subvicina
- Gene Symbol
- Hr39
- Assembly
- GCA_936440885.2
- Location
- CAKZFJ020000115.1:1198241-1204610[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.15 2.7e+03 -1.6 0.6 80 179 166 261 128 287 0.54 2 3 2 3.5e+04 -9.8 14.7 47 151 293 411 260 452 0.38 3 3 2.1e-95 3.6e-91 307.6 12.4 1 408 522 947 522 947 0.84
Sequence Information
- Coding Sequence
- ATGTCGTCTTCGATTAAAACAGAGAATCTGACAACGGGTGCCGTGGttaccactaccaccaccacggCAGGAGGCACTACATTTCAATTACCCATCAACATGAGCAATACAGCAACAGCAGGAGTGGCAGGAGGTGGAGGtggaggtggtggtggtagtataACCACTACTTGTACCACCACAACGACACGCAATAATGTTTCAGTCACGAATATTAAATGTGAAGTGGacgatggtggtggtggtggcaatACCAGTTCATCCTCTACGAATGGCAATATTGTCTCGGTGGGATTCTACAATGGTTCTAAGGCGGCAAGCATAGGCGGGGCAGGGACAGGTAGTGTAATAACCTCTGGCCATGGCATACGTATACCGGTAACCAAGGCTGAGGATTCCGATTCGGAAACGGAACTAAcgaatatagaaaatttaaaagtaacacGACGTGTGGCCAGTTCCACTTCAACGGCGGCTAATCATCATAATGGCCCCAGGCCCATGTCTTGGGAAGGTGAACTTTCGGAGAATGAAGATACCCGTGAGGCGGAATTAATGGACACGGACTCCACCATGAGCAATGGTGGCAATATGCCCGAGCCCTCTAATGCCGTAGCTGTTATAAAAAGTGAAGCCACTACTACAACGCCCTCGTCTATGTCTTTCTCGACTCTAGGCAGTGCCCAAATTAAAAGCGACATAGAGCCCTTAATGCTGGATACTCATCAAGTTACTGGCGGTGGTATTTATCATCCGAAACTAAAGTTGGCGCCCACACAAAGCGATCCCATCAATTTGAAATACGAGCCACCTGATCACTCGGCTTTAGTCAATTCCCCCTTGATGGCCCGCCAGAAATCAACCACAGCCTTGCCTCATTTACCTGCCAATCCCAGTCCAGATTCTGCCATACATTCCGTTTACACTCATAGTTCACCATCCCAGTCGCCATTGACTTCAAGGCATGCTCCCTATACGCCCTCATTGTCGCGCAACAACAGTGATGCTTCCCATAGCTCGTGTTATTCCTATTCCTCGGAATTTAGTCCTACTCACTCACCCATACAGGGTAGGCATCCGGCTCCTCATGGTGTTTATGGTGGCAATTTTAATGGCGCTACGGCCAATAGCCTGCAACATTCCGGTTTACATTATCGGCCCATGTTAGGCTCACAAAGCCTAACTGCTCAAACGTCATCATCGGCGAAAATTGAAAGTGGTTCTAGTGAAGTGCAAAACCTATCCATGGATGCCTCATCTTCATCATCTTCAGCGTTTACCATGTCATCAGACTCTACAGGCTTACCAGCCTCCCCGGCAGCAGGCATATCGCGACAGCAACTGATAAACTCTCCCTGTCCCATATGTGGTGATAAAATATCCGGTTTCCATTACGGCATCTTTTCATGTGAATCCTGCAAAGGTTTCTTTAAACGTACCGTCCAAAATCGTAAGAATTATGTGTGTGTACGAGGTGGACCCTGTGCAGTTAGTATTACCACACGTAAAAAATGTCCAGCCTGCCGCTTTGACAAATGCCTGCAGAAGGGCATGAAACTGGAAGCCATAAGAGAAGATCGCACACGCGGCGGCCGTTCTACTTATCAATGTTCATACACGCTACCCAATTCCCTCATGAGTCCACTACTCTCGCccgaacagcagcagcagcagcaacaacagcaaggCTCCACACAGAATATATTGGCGGGTCAGCAGCATTCACAATTGCAGCAACAATTGCAGCAAAGACTTAATCCTGCTCTGCAAAATGTTCAACAGACAAATGGCTACGCGGGCCATAGCTCTAATGCTATGAATGCTGCCTCGGCTACCATTAAAACCGAGCAAGCAGATCCTTATGTTAAAAATCTAACGGCAGCTCATTCAACTTCCTTGAATGGCCTCAATACATCAACCCATCGTTCACATTCTCATTTGCATGCGTCTTCTTCGAATCCTGCTCTTAGCACTGCTGCTACAACCTGTTCATCTTCCTCCTCGACATCCGCCTCCTCCACTTCCCATGCGTTGCATCACAACAGTATTCCTCAGCTCTTACAAGAAATTATGGATGTTGAACATCTGTGGCAATACACCGATGCTGAGCTGGCACGACTTAATCAACCGTTGACATCATCGTCTAGTTCGGCTTCATTGAATTCCAGTTCAACGGATTCATCCAGTGCTGCGGGCGCCGCCAATCAAATGACCAATCCACTGCTGGCCAGTGCTGGTCTATCGTCGAGCACCAATCCGGATTTGATTGCCCATCTATGCAAAGTGGCCGACCATCGACTGTACAAGATTGTCAAGTGGTGCAAGAGTTTGCCGCTCTTCAAAAACATATCGATTGACGATCAAATCTGCCTGCTCATCAATTCATGGTGTGAACTTTTACTTTTCTCCTGCTGCTATCGTTCCATTGATACACCGGGAGAAATTAAAATGTCATTAGGCAAATCGATTACGCTGCCACAAGCTAAACTTACTGGTTTTCAGCCCTGCATTGAACGAATGCTGAACCTGACAGACCATTTAAGACGTTTACGCGTTGATCGTTATGAATATGTTGCTATGAAGGTTATTGTACTACTGCAATCGGATACTTCCGAACTGCAAGAACCTGTCAAGGTAAGGGAATGCCAAGAGAAGGCTTTGCAAAGTTTGCAGGCCTATACCTTGGCCCACTATCCGGATTGCCCGTCGAAATTTGGTGAACTATTGCTGCGCATACCCGATCTACAGAGAACCTGTCAGTTGGGTAAAGAAATGCTGTCCATTAAGTCACGTGATGGTGGcgactttaatttattaatggaACTTTTACGCGGAGAACATTGA
- Protein Sequence
- MSSSIKTENLTTGAVVTTTTTTAGGTTFQLPINMSNTATAGVAGGGGGGGGGSITTTCTTTTTRNNVSVTNIKCEVDDGGGGGNTSSSSTNGNIVSVGFYNGSKAASIGGAGTGSVITSGHGIRIPVTKAEDSDSETELTNIENLKVTRRVASSTSTAANHHNGPRPMSWEGELSENEDTREAELMDTDSTMSNGGNMPEPSNAVAVIKSEATTTTPSSMSFSTLGSAQIKSDIEPLMLDTHQVTGGGIYHPKLKLAPTQSDPINLKYEPPDHSALVNSPLMARQKSTTALPHLPANPSPDSAIHSVYTHSSPSQSPLTSRHAPYTPSLSRNNSDASHSSCYSYSSEFSPTHSPIQGRHPAPHGVYGGNFNGATANSLQHSGLHYRPMLGSQSLTAQTSSSAKIESGSSEVQNLSMDASSSSSSAFTMSSDSTGLPASPAAGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCVRGGPCAVSITTRKKCPACRFDKCLQKGMKLEAIREDRTRGGRSTYQCSYTLPNSLMSPLLSPEQQQQQQQQQGSTQNILAGQQHSQLQQQLQQRLNPALQNVQQTNGYAGHSSNAMNAASATIKTEQADPYVKNLTAAHSTSLNGLNTSTHRSHSHLHASSSNPALSTAATTCSSSSSTSASSTSHALHHNSIPQLLQEIMDVEHLWQYTDAELARLNQPLTSSSSSASLNSSSTDSSSAAGAANQMTNPLLASAGLSSSTNPDLIAHLCKVADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCYRSIDTPGEIKMSLGKSITLPQAKLTGFQPCIERMLNLTDHLRRLRVDRYEYVAMKVIVLLQSDTSELQEPVKVRECQEKALQSLQAYTLAHYPDCPSKFGELLLRIPDLQRTCQLGKEMLSIKSRDGGDFNLLMELLRGEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01259264;
- 90% Identity
- iTF_01313042;
- 80% Identity
- iTF_01315562;