Ssub012037.1
Basic Information
- Insect
- Sarcophaga subvicina
- Gene Symbol
- bab2
- Assembly
- GCA_936440885.2
- Location
- CAKZFJ020000111.1:748132-749845[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.5e-18 1.9e-14 54.0 0.0 1 43 56 99 56 101 0.95
Sequence Information
- Coding Sequence
- ATGATTGAAAGCGGACATCCTTGGATGGGTGGTGCATCAACCTCATCCGTTACTGACAGCTATCAATATCAATTGCAGTCCATGTGGCAAAAATGTTGGAATACTAATCAGCAAAATCTTGTGCAACAACTTAGATTTCGTGAGCGtggcccgttaaaatcctggcGTCCGGAGGCAATGGCCGAAGCCATTTTCAGTGTGCTTAAGGAAGGTTTATCACTGTCACAGGCCGCCAGAAAATATGATATTCCATATCCCACATTTGTTTTGTATGCTAATCGTGTGCACAATATGCTGGGACCTTCGCTGGATGGTGGCTCTGATCCGCGACCAAAGGCCAGAGGACGACCGCAGCGAATATTGTTAGGCATGTGGCCTGAGGACTTGATACGTTCGGTAATAAAGGCTGTAGTTTTTAGGGATTATCGTGAAATCAAAGATGAACTTGGCAATTTACCATTTGCCAACGGTCAACCACATGTGgCCATATTTGGTAGTTCACCGGGTGCTGCGAATGTTTCGAATGGTTTCCACAATGCCGCCAAGTTAGCAGGACAAAATACTGGCATGTCACACGAGACGGCAAGTCCATTATCATCAATGACTGAGAACCTAAGACGACAAATCATGTCCCAGCAACAGCAATCACCCATTTCACAAACGATGAACATGTACAAGTCACCCTCGTATGGACAACGTTCCGAAATCGATGATCAATTGTCAGGCGTTTGTGCGAAACAGCATGCAGATCGTCGTGGCACAGAAAATTTACCTGATCTAAGTGCTTTGGGTCTTATGGGTTTGCCGGGACTGAATGTTATACCTTCGGGAGCGTCACGTAACAGCCAAATGCATACAACTGCGGCGGCCTTTTCACGTGAACGGGAACGAGAACGCGAAAGGGAACGTCAACGCGAGAGGGAACGTGAACGTGAAAGGGAACGTGATAGAGAAAGAGAAAGGGAACGTGACAGAGAACGGGAACGAGAGCGTGAACGTGAACGTGAGCGACAATACAGCAATCAATCGCGTGGCTCTGCAGCGGGAGAATCGCTAAAATCAGGTGGTTCTGGCTCTCCTTATtcacaaatgaaaatgaaagaacatCCGAACTATGCGTATAACAAACGATTTTTAGACAGTTTACCGCCGGGTATTGATTTTGAAGCCATTGCTAATGGCCTGTTACAGAAATCTACCAATAAAAGCCCCCGCTTCGAAGATTTTTTTCCAAGTCAGGACATGAACGATTTAATGTCGGGTCCGGACACAGTTAATAGCCCTTCCTATCCAACGCAACGAGACACCACGAATCTTATGAAAATCAAATTGGAACATCAACCAACTGAACTGCAACATGAGGATTGA
- Protein Sequence
- MIESGHPWMGGASTSSVTDSYQYQLQSMWQKCWNTNQQNLVQQLRFRERGPLKSWRPEAMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSLDGGSDPRPKARGRPQRILLGMWPEDLIRSVIKAVVFRDYREIKDELGNLPFANGQPHVAIFGSSPGAANVSNGFHNAAKLAGQNTGMSHETASPLSSMTENLRRQIMSQQQQSPISQTMNMYKSPSYGQRSEIDDQLSGVCAKQHADRRGTENLPDLSALGLMGLPGLNVIPSGASRNSQMHTTAAAFSRERERERERERQRERERERERERDRERERERDRERERERERERERQYSNQSRGSAAGESLKSGGSGSPYSQMKMKEHPNYAYNKRFLDSLPPGIDFEAIANGLLQKSTNKSPRFEDFFPSQDMNDLMSGPDTVNSPSYPTQRDTTNLMKIKLEHQPTELQHED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00370896;
- 90% Identity
- iTF_01312936;
- 80% Identity
- iTF_01313729;