Ssub000988.1
Basic Information
- Insect
- Sarcophaga subvicina
- Gene Symbol
- Rfx2
- Assembly
- GCA_936440885.2
- Location
- CAKZFJ020000004.1:3080102-3087199[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.4e-38 5.1e-34 117.6 0.2 3 78 382 457 380 458 0.97
Sequence Information
- Coding Sequence
- atgCATTCTCGACTTAATTTGGACCAACAGCAGCATTTACAGCATCATTTGCAGCATTTAAATtcgccaaataattttaatcataatatttttgaaaagtgttGTTGCAACATCCATTCAATAAGTGCTCATCAAAGCCAAAATCAGTTTACCTACCAACATCATCAGACATTGGCAccacatcattatcatcatcatcatcatcaccatcatcactACCAACACCATCAGCAAAATCGGTCAGAATTAAGTCAACATACACGCAGtcaacatcaacagcagcaacaattgcAATATTCACCAATTTTGACCGTTTTATCGTCGTCATAccaacagcatcagcatcagcaacatCAGGTATCTAAACTACAAttgcaaaataatcaaaattcgATTGCACATAACTTGTACCATCGTCACCAGACGTTGGTTGCTACCGTCTCGTCAAGTAGCTCGGATGTGACATCTGCATCCATATCTACCCCAACAGCACTTACATCAACGTCGACATCTCCACTTCTTAAATTCGGACCTCGAGCTGCCTCAGTCTCTGTAAATAATCGTGTTACCAAGTTATCTTCTTCTGCTCTACTATCACCACTTTCTCAAACCCTATCGGCAACAGCAACGTCCACTGCAACAGCATCGACTATGTATCGACGTCATAACAATTTATCATATTGTGGTGtATCTAACCAAGATGCCGGCCAGAACTATCAAGTGCAATACGTTGATACCGAACTGTATCACAGCAATTCAAGTCAATCTCAAATGGGTTATGCCTTTTGCCCCATTGGCGATTATCAACCGAATGGCCAGTCATATTATTCCACAACGACCACAGCCAATTATTCTTCAGCTTTACCGTTGAATTCAACTAATCATGCTGGGAATACATTACCTTATATTGTGCCGGTCGAAGAAAGTCTTCTTTTAAACACATCCTCACAGTCACACAGTCGAGATTCCCCGCATAGTTTGACGGAAGTTGCATTTATACAAGAGGCACAAGGTACTTCACAAACGCCTACTTCTACAACAGCTAATTCGGTAAATATAACCGGTGGAGGCAGTGCTGGAGTAATTGATACTTCGTCAGAAAACGATCAGAGCAATTTgggaaatacaaacaaaatagcTTCAGCGACTattaaATGGCTCTCCCGAAATTATGAAACCGCTGAGGGGGTAAGTTTACCACGTTCAACTCTCTATAATCACTACATTCAACATTGTAATGAGAGCAAAATAGAACCCGTAAATGCTGCAAGCTTTGGGAAACTTATTAGGTCCGTTTTTTCTGGATTAAGAACTCGGCGTCTAGGAACCCGTGGCAATTCTAAGTACCATTATTACGGCATACGCATCAAACCCGAATCGATTCTCAATCAAATGCTCGATGAAAAACCAACATTTCAAACTCACACCACAAATCCCACTCAAAATTCAAGCAACGCGATGGCGCCTTGCAGTTCAAGTCCAGTCATTGGCACTAATAGCGTGCTGCACTCAGTTAATTCCCTTCCAAGTGGAAGTAACTTATCGCAAAGTAATCGATATTCAAAAAAATCGCACATATTTAAATCAGAAACCCAGGAAGCATGTGGCCAATTTTTGGGCGATGGCGCTGGTGCGATACCAACATTTCCAACAATTGAATTGGATAACACGTTCGATAGCGAATTAACGCAAGATGATGTAGAGGCATTTCGTTCCATGTATCGTGAACattgtgaaaattttcttgATGCTGTACTAAATTTAGAATTCAATACTATTGAGTTTTTGTGGCGAGACTTTTGGCGCGAAAACAGTAGCATAGATGAGTGCGTTGAAGAggataaatatttgaataaaacaaaattatatctgCTTTGCCACTGTCCGGGTGTACAGAAATTTGTTCGTGAGATTGATTACCAATTCTATCAAAACATGGTGGATGTCATTATACCAGATGTACTACGGTCTATTCCAAATTCTTTAACCCAAGCCATAcgtaattttgcaaaaaatatggaaatctGGTTATGCGAATCGATGGTTGGCGTACCAGAACGAATGGTGCAAATTAAATCTTCAGCTATTTCGGCATTTTGCCAGACTCTACGCCGGTATACTTCTCTAAATCATCTCGCACAGGCTGCCAGAGCGGttcttcaaaataattcacaaataACTCAAATGCTAAGTGACTTAAACCGTGTAGACTTTCACAACGTTCAGGAACAAGCCGCTTGGGTATGTCAGTGTGAACCAGCCATAGTACAGCGTTTAGAGAATGACTTTAAATCTGCTTTGCAACAGCAGAGCTCCTTAGAGCAGTGGGCAGCTTGGTTGCAGGTCGTCGTAGATTCAGCTTTACAAGATTATTTCGGAAAACCTGGTTATGCAAAAGCCGCTCGACAATTTCTTCTTAAATGGAGTTTCTATAGTTCACTGATAATACGTGACTTAACCTTACGATCTGCATCCAGTTTTGGTAGCTTTCATTTAATACGCCTCCTTTatgatgaatatattttttatttggtcgAACATAAAATTGCTGAAGCACATCAGAAAACTGCTATAGCTGTTATCTGTGATCTaaagCAAAAAGAAATCGAATTTGACTTTGGTTACCAGTTGGAATACATTGCCACAGAAACCAACACACTTGATCGGGGAAACAAACGCATGAAACACGAATGA
- Protein Sequence
- MHSRLNLDQQQHLQHHLQHLNSPNNFNHNIFEKCCCNIHSISAHQSQNQFTYQHHQTLAPHHYHHHHHHHHHYQHHQQNRSELSQHTRSQHQQQQQLQYSPILTVLSSSYQQHQHQQHQVSKLQLQNNQNSIAHNLYHRHQTLVATVSSSSSDVTSASISTPTALTSTSTSPLLKFGPRAASVSVNNRVTKLSSSALLSPLSQTLSATATSTATASTMYRRHNNLSYCGVSNQDAGQNYQVQYVDTELYHSNSSQSQMGYAFCPIGDYQPNGQSYYSTTTTANYSSALPLNSTNHAGNTLPYIVPVEESLLLNTSSQSHSRDSPHSLTEVAFIQEAQGTSQTPTSTTANSVNITGGGSAGVIDTSSENDQSNLGNTNKIASATIKWLSRNYETAEGVSLPRSTLYNHYIQHCNESKIEPVNAASFGKLIRSVFSGLRTRRLGTRGNSKYHYYGIRIKPESILNQMLDEKPTFQTHTTNPTQNSSNAMAPCSSSPVIGTNSVLHSVNSLPSGSNLSQSNRYSKKSHIFKSETQEACGQFLGDGAGAIPTFPTIELDNTFDSELTQDDVEAFRSMYREHCENFLDAVLNLEFNTIEFLWRDFWRENSSIDECVEEDKYLNKTKLYLLCHCPGVQKFVREIDYQFYQNMVDVIIPDVLRSIPNSLTQAIRNFAKNMEIWLCESMVGVPERMVQIKSSAISAFCQTLRRYTSLNHLAQAARAVLQNNSQITQMLSDLNRVDFHNVQEQAAWVCQCEPAIVQRLENDFKSALQQQSSLEQWAAWLQVVVDSALQDYFGKPGYAKAARQFLLKWSFYSSLIIRDLTLRSASSFGSFHLIRLLYDEYIFYLVEHKIAEAHQKTAIAVICDLKQKEIEFDFGYQLEYIATETNTLDRGNKRMKHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01313498;
- 90% Identity
- iTF_01313498;
- 80% Identity
- -