Sper003865.1
Basic Information
- Insect
- Sarcophaga peregrina
- Gene Symbol
- -
- Assembly
- GCA_014635995.1
- Location
- CM025789.1:92066516-92070822[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00068 0.054 14.6 0.0 1 23 146 169 146 169 0.95 2 12 0.0098 0.78 10.9 3.1 2 23 218 240 214 240 0.87 3 12 0.0037 0.29 12.3 0.3 1 23 362 385 362 385 0.92 4 12 0.042 3.4 9.0 2.7 2 23 435 457 434 458 0.94 5 12 0.013 1 10.6 0.1 1 23 528 551 528 551 0.91 6 12 0.00022 0.017 16.1 1.8 2 23 602 624 602 624 0.97 7 12 0.0074 0.59 11.3 0.7 1 23 735 758 735 758 0.95 8 12 7.9e-05 0.0063 17.5 0.1 1 23 807 830 807 830 0.95 9 12 0.0011 0.086 14.0 0.9 2 23 880 902 879 902 0.95 10 12 0.37 30 6.0 0.6 1 22 980 1001 980 1003 0.89 11 12 0.07 5.5 8.3 1.3 1 20 1055 1074 1055 1076 0.94 12 12 0.017 1.4 10.2 0.0 2 23 1160 1182 1159 1182 0.95
Sequence Information
- Coding Sequence
- atggaTAACTTGGAGCCTTGGAATATGTTTACTAATGATTTTGTACCAGATGAAAGTAATACCGATGAGGGAGAAGACGCTGATATGGTCGAGAGTGAAGGTGGCGTTGAAAATGCTTCGTTTTCTGCAATACCCTCACCAGTTCAAGGTATGCAAGTCAAAGAAGAACCAGAAGATGTGACTGATGGAATATATGATGACGATGTCACCAATGCTGCAGTTCATTTTTTGTCATCCAATTCCAACAATAACGATAGTCGCCGCGTACGTAATGCTGATGAAGATGATGCTGTTTTTGATTTTGGCTTAGAATCGTCAAATTCGTATAAtcgaattttcaataaatcctcTACACAGTCGTCCGGAACGGAAAAGGATACCGCCGCAGAGGACCAATATTATAATGCAATGGTTAAATATGAAGATGCCATCATTTATATATGTCCGGCATGTGGCGAAGAGTTCAGTTCGCAAGAGATGtggaaaaatcatttaaacCTTATACATCTCTATAATACACGTCGTGGTTTGAATTTTATACAACTGGATAAACTTTACCATGAATGTATGGAATGCCATAAACGTATTGCCATGCACAgtatggaaaatttattgaagcACAAATTCACACATCTACCGTATAGATGTAGTAAGTGTATGGTATGTAAACGGCAATATAAATACCGGCAGGACCTCATGGTGCACTTAAGGATTTCACATAAAAATGATTTGATAGCGCTTTTAAAAAAACAGCATAAAAATCAGAAACCTCAAACTATTCGTTCCCTACTGAGCAAATCAGATGGTTTTGCTTCTCAGAGCAGTAAATCAAATGCGTCAAATATACTCAATAATAACGCCGATAACATTGAAGTAAAAAACGAATTACTCAATGACAATGACGACGATACCATGGGTGAAGATAGTTTGCCTCGTCCACCTTCTAAAAGGCATGCCAAGGATTTGCCCAATTTTTTGGAGGATGGCTCAACAAACGGTTCATCTGGTGATcaacaaatttcaaatcgtAATAGGTCTACTGCATCGGACGATATCGATATCTCAATtgaagaatatattttatttatatgtccTCAATGTGGTACAGAATGTGAGACACAAGCTCAATGGCAACAACACATTGAGTTTGTACATGAGTTTGGCACAAAACGAGGTCTTAACTTTAGGGAATTACTTAATCAAGCGGCTCAGTGCATGAGTTGCAATGTGATTTTGTCAAATTCTTCAATTAGAAACCTGCAAGTACATAAATTTACTCATTTACCGCATAAGGAATGGATGACTTGCAAGCTTTGTTTTACCTCGTTTAATACGAATCGCGATATTATTAAGCATTTAGCTTCTAAGCATCATTTAATGTCAGAAAAAAAGTTGCCCAAGTCTGCGCCTGACACCGTAAGTAATGATGAAGACAGCCAAGAAGCTTTTGGTTTTGGTAGCGGAGCTGGTTTCGGTACAGcagatgattatgatgatggaACATCGGATAGTAGAATTCATTCTCATGATTCATatcaaacaaaaccaaatgaaCGTGATGTCTTTGAGCAACATATGGCGTACATTTGCCCAGCATGTGGTAAGGAATATAATGATAAAAAAGTATGGCGTAAGCATATCGTGGAAATTCACAAGTTAGGTGAATTAGAAAATCTTAACTTTGAATTTATTACCGATCGCCAATTAAAATGTAGAGAATGTGATAAGATTATTACGAACGCGTATGGCATACAAAATGCTCAACAGCATCACATGACTCATATGCAATATAAATCGTTCGCCAAGTGTCGTATATGTCGCAAAACGTATACGGATCGTAAGGGTTTAATGAAACATTTGCGAAATGCTCATAAAGTAGGATCTCGGGGCCCTACACACGGGGAAACCACACACTCTGCAAATATTGGTGGTAACAACAACAGTGCTGCTGGCAGCGGAACTAACTTTAAGCCATTTGTTAAAAAACCTTATAGGATAGCACACTATCCgccaaaagaaattgttaaattgtCAAATTATACATTCGAAATAATCCATTTAATTgaagatgatgacgatgataatgtTCCGAGTACGGGTTCTGGTGGTTACGATTTTGCCAAAGGAGATGCTCATTTATACAGGAACAATTCACCATTTAATACACCACCTAAAAAGATCAGTATCGAACAGATCAGTCGACACAGATGTGTTGATTGTGGTTCGATATTTCAAACAGCACAATCCCTTCAATCGCATGTTAAACAAGAGCACGAATTCGAAGATTATCAAAATTCACCATCTCAACCGCAAGTACAAAATGAAGAACAATCAAATGATACTGATGATTTATTAGTACCGAGTCGAGATGTAGATGTCCAGCCGGAAGAACGCACGACGATGGATTGTAACTTTATATACTTATGCCCTCAGTGCGGCGTAGAATTTCGTTCACAAAACGAATGGCGTCGTCACATCAATGTGGTACATAATTTCGATAAACGAGAGTATTTAGGTTTTCGACCTTTGGATAAGTATCGCTATCAGTGTAAATTGTGTAAAGATACATTGACAAGTTCGAAGCTGAAGGGTTTGCAGGATCATAAATTTAGACACTGTCCttacaaactttatttaaagtgTGTCCTTTGCGGGCAATCTTATAATCATAAACCCAATATGATAGCACATTTGCGACAAAGACATAACATTGTAGATATTATCGATGGAGGCGTTAGTATTTCCACGGATAGTTCTCTACAAAGACATTCATCAAGCTCAAATAACAGCATTTCTGCGAAGGATTTTAATGATGCTCCGGCCAGACCTATAAGAAATGCTGATCCTTCTGTAAATAACGTAAGTCGACCTCCTGGCTTAAAGACCGTTGAGGATGTCATATCTTTTCATAATGCTGTCGATCATGAAACTATAACATACTTCTGTCCGGCatgtaatgaaaattttgattcCCACGTTTTTTGGCGCAAACACATTGTGGACGAGCACAATCTGAACAGTAGAGAAGGCTTAAATTTCCGTCAATTGGATGAACACCATTATATATGCTTGCAGTGTTATAAACGTGTCACGGTCACACACACTAAAGGCGCAATCGGCCAATTGCAATCACATAAATTTAGACATTTGCCATACAAATCATTTCGCTGCACATCCTGTCAGGCCGAATTTGTTCGcaaacaaatgtttttcaaaCATTTGGATAAAAATACTAACAAGTGCTCGGGTATAAATCCAGAAAGTAATTTCACTGATAATGCAGATAATAGCACATCAATGAATGATGATGACATTGACTTGAGTGCTACGTTAGCACTCGGTGACAATTCGTATAGTGAACATGATGAAAATAGACCGACATCTACGAAGTTCTCTTGGCCTACGCGCTCTTCACTGCCAGCTTCATCCAGTGCTGCTAATGACacgaataaagaaaatttgggTTGCTTTACTTTAAATTGCCCTCAATGTGGAGCCGATTTTGATTCAACACGAGATTGGCGTGAGCACATTAATATCGAACACAATCTTAATAATCGaactgtattaaattttaaaaaggtcgGTCCCAAGCTTCATATTTGCTTGGAATGTAACGAGCATGTCAACGGCCGAAAATTACGTGATCTACAAGTGCACAAATTCAAACACTTACCATACGGAGCCTACTTACATTGTCGCTTCTgttctatgaaatattttcacattagcAACATGCAAGAGCATCTAAAAAATAAGCATCAGAATATGTTGcaaaaaatgaaacattttgaaGAAGATTCTGTAACTCTAGATGAAGAGGAGGAATGTGTAACCGATAGTAACACTGATGCAGACGCAGATGACAGTAATACTGGGGTAGATGATGACGTTGTTGATATGGATTTATTGGAAGCAGAGGCCGAAATCGAAGAGGTAGATCCTGATAATGTTGAATCTGATGAACAATATCTTTTAGGTTaa
- Protein Sequence
- MDNLEPWNMFTNDFVPDESNTDEGEDADMVESEGGVENASFSAIPSPVQGMQVKEEPEDVTDGIYDDDVTNAAVHFLSSNSNNNDSRRVRNADEDDAVFDFGLESSNSYNRIFNKSSTQSSGTEKDTAAEDQYYNAMVKYEDAIIYICPACGEEFSSQEMWKNHLNLIHLYNTRRGLNFIQLDKLYHECMECHKRIAMHSMENLLKHKFTHLPYRCSKCMVCKRQYKYRQDLMVHLRISHKNDLIALLKKQHKNQKPQTIRSLLSKSDGFASQSSKSNASNILNNNADNIEVKNELLNDNDDDTMGEDSLPRPPSKRHAKDLPNFLEDGSTNGSSGDQQISNRNRSTASDDIDISIEEYILFICPQCGTECETQAQWQQHIEFVHEFGTKRGLNFRELLNQAAQCMSCNVILSNSSIRNLQVHKFTHLPHKEWMTCKLCFTSFNTNRDIIKHLASKHHLMSEKKLPKSAPDTVSNDEDSQEAFGFGSGAGFGTADDYDDGTSDSRIHSHDSYQTKPNERDVFEQHMAYICPACGKEYNDKKVWRKHIVEIHKLGELENLNFEFITDRQLKCRECDKIITNAYGIQNAQQHHMTHMQYKSFAKCRICRKTYTDRKGLMKHLRNAHKVGSRGPTHGETTHSANIGGNNNSAAGSGTNFKPFVKKPYRIAHYPPKEIVKLSNYTFEIIHLIEDDDDDNVPSTGSGGYDFAKGDAHLYRNNSPFNTPPKKISIEQISRHRCVDCGSIFQTAQSLQSHVKQEHEFEDYQNSPSQPQVQNEEQSNDTDDLLVPSRDVDVQPEERTTMDCNFIYLCPQCGVEFRSQNEWRRHINVVHNFDKREYLGFRPLDKYRYQCKLCKDTLTSSKLKGLQDHKFRHCPYKLYLKCVLCGQSYNHKPNMIAHLRQRHNIVDIIDGGVSISTDSSLQRHSSSSNNSISAKDFNDAPARPIRNADPSVNNVSRPPGLKTVEDVISFHNAVDHETITYFCPACNENFDSHVFWRKHIVDEHNLNSREGLNFRQLDEHHYICLQCYKRVTVTHTKGAIGQLQSHKFRHLPYKSFRCTSCQAEFVRKQMFFKHLDKNTNKCSGINPESNFTDNADNSTSMNDDDIDLSATLALGDNSYSEHDENRPTSTKFSWPTRSSLPASSSAANDTNKENLGCFTLNCPQCGADFDSTRDWREHINIEHNLNNRTVLNFKKVGPKLHICLECNEHVNGRKLRDLQVHKFKHLPYGAYLHCRFCSMKYFHISNMQEHLKNKHQNMLQKMKHFEEDSVTLDEEEECVTDSNTDADADDSNTGVDDDVVDMDLLEAEAEIEEVDPDNVESDEQYLLG*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01315911;
- 90% Identity
- iTF_01313332; iTF_01314232; iTF_01315911;
- 80% Identity
- -