Sbul013388.1
Basic Information
- Insect
- Sarcophaga bullata
- Gene Symbol
- -
- Assembly
- GCA_005959815.1
- Location
- QOCX01000067.1:36975-42492[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00051 0.028 14.6 0.0 1 23 149 172 149 172 0.95 2 12 0.0074 0.41 11.0 3.1 2 23 221 243 217 243 0.87 3 12 0.0028 0.15 12.3 0.3 1 23 362 385 362 385 0.92 4 12 0.067 3.7 7.9 1.5 2 23 435 457 434 458 0.92 5 12 0.0094 0.53 10.6 0.1 1 23 528 551 528 551 0.91 6 12 0.00017 0.0092 16.1 1.8 2 23 602 624 602 624 0.97 7 12 0.0056 0.31 11.3 0.7 1 23 730 753 730 753 0.95 8 12 5.9e-05 0.0033 17.6 0.1 1 23 802 825 802 825 0.95 9 12 0.00081 0.045 14.0 0.9 2 23 875 897 874 897 0.95 10 12 0.28 16 6.0 0.6 1 22 975 996 975 998 0.89 11 12 0.053 2.9 8.3 1.3 1 20 1050 1069 1050 1071 0.94 12 12 0.013 0.72 10.2 0.0 2 23 1155 1177 1154 1177 0.95
Sequence Information
- Coding Sequence
- ATGGATAACTTGGAGCCTTGGAATATGTTTACTAATGATTTCGTACCAGATGAAAGTAATACCGATGAGGGAGAAGACGCTGAAATAGGTGAGAGTGAAGGTGGCGTTGAAAATGCTTCGTTTTCTGTAGTACCCTCACCAGTTCAAGGTATGCAGGTCAAAGAAGAACCACAAGATGTCACTGATGGAATATATGACGACGATGTCACCAATTCTGCAGTTCATTTTTTGTCATCAAATTCCAGCAATAATGATAGTCGACGCGTACGTAATGCTGATGAGGACGATGCTGTTTTTGATTTTGGCTTAGAATCGTCAAACTCATACaatcgaatttttaataaatcctcTACACAGTCGTCCACAACGGAAAAGGATACTGCCAATTCGGCAGCAGAGGACCAATATTACAATTCAATGGTTAAGTATGAAGATGCTATAATTTATATATGCCCAGCCTGCGGGGAAGAGTTCAGTTCGCAAGAGATGtggaaaaatcatttaaaccTTATACATCTTTATAACACGCGTCGTggtttgaattttatacaattgGATAAACTTTATCATGAATGTATGGAATGTCATAAACGCATTGCCATGCACAGTATGGAAAACTTATTGAAGCACAAATTTACACATCTACCATATAGGTGCAGTAAGTGCATGGTATGTAAACGGCAATATAAATACAGGCAGGACCTCATGGTGCACTTAagaatttcacataaaaatgatttgatagcacttttaaaaaaacaacataaaaatcagAAACCTCAAACTATTCGTACCCTACTGAGTAAATCAGATGGTTTTGCTTCTCAATCAAATGCGTCAAATATACTCAATAATAATGCCGATAATATTGAAGTAAAAAACGAATTACTGAATGACAATGACGACGATACTTTGGGTGAAGATAGTTTGCCTCCTCCACCTGCTAAAAGACATGTTAAAGATTTGCCTAATTTTTTGGAGGATGGATCAACAAACGGTTCGTCTGGTgatcaacaaatttcaaatcgtaACAGGTCTACTGTATCGGACGATATCGATGCCTCTCTTGAAGAATATATTCTGTTTATATGTCCCCAGTGTGGCACAGAATGTGAGACACAAGCTCAATGGCAACAACACATTGAATTTGTGCATGAGTTTGGCACTAAACGAGGTCTTAACTTTAGAGAATTGCTTAATCAAGCGGCTCAGTGCATGAGTTGCAATGTGATTTTGTCAAATTCTTCAATTCGAAACCTACAAGTACATAAATTTACCCATTTAACGCATAAGGAATGGATGACTTGCAAGCTTTGCTTTACCTCGTTTGATACGAATCGcgatattattaaacatttagcGGCTAAGCATCAtttaatatcagaaaaaaaGGTGTCTAAGTCTGCACCTGACACCGTAAGTAATGATGAAGACAGTCAAGAGGCATTTGGTTTTGGTAGTGGAGCTGGTTTCGGTACAGcagatgattatgatgatggaACATCGGATAGTAGAATTCTTTCTCATGATTCGTATGCATCAAAATTAAACGAACGTGATGTCTTTGAACAACATATGGCGTACATTTGCCCAGCATGTGGAAAGGAATATAACGATAAAAAAGTATGGCGTAAACATATCGTGGAAATTCACAAGTTAGGTGAATTAGAAAATCTTAACTTTGAATATATTACCGATCGCCAATTAAAATGTAGAGAATGTGATAAGATTATTACGAACGCGTATGGCATACAAAATGCTCAGCAGCATCACATGACTCATATGCAGTACAAATCGTTTGCCAAGTGTCGCATATGTCGCAAAACGTATACGGATCGCAAGGGTTTAATGAAACATTTGAGAAATGCTCATAAAATAGGATCACGTGGCCCTACATATGGGGAAGCAAACATTGGTGGCAACAATAACGTTGCTGGCAGTGGAACTAACTTTAAACCGTTTGTTAAAAAACCATATAGGATAGCACACTATCcgccaaaagaaattgttaaattgtcgAATTATACATTCGAAATAATCCATTTAATtgaagatgatgacgatgataatgttCCAAGTACTGGTTCTGGTGGTTATGATTTTGCCAAAGGAGATGCTCATTTATATAGGAACAATTCACCATTCAATACACCACCTAAAAAGATTAGTATCGAACAAATCAGTCGACACAGATGTGTGGATTGTGGTTCGATATTTCAAACAGCACAATCGCTTCAATCGCATGTTAAACAAGAACACGAATTTGAAGATTATCAAAATTCACCATCTCAACCACAAGTACAAAATGAAGAACAATCAAATGATACTGATGATTTATTAGTACCGAGTCGAGATGTAGATGTTCAGCCGGAAGAACGCATGACCATGGATTGTAACTTCATATACTTATGCCCTCAGTGTGGCGTAGAATTTCGTTCACAAAACGAATGGCGCCGTCACATCAATGTGGTGCACAATTTCGATAAACGTGAATATTTAGGTTTTCGCCCTTTGGATAAGTTTCGCTATCAGTGTAAATTGTGTAAAGATACATTAACAAGTTCGAAGCTGAAGGGTTTGCAGGATCATAAATTTAGACACTGTCCttacaaactttatttaaagtgtGTCCTTTGCGGGCAATCCTATAATCATAAACCCAATATGATAGCACATTTGCGACAAAGACATAACATTGTAGATATTATTGATGGAGGCGTCAGTATTTCCACGGATAGTTCACTTCAAAGACATTCATCAAGCTCAAATAACAGCATTTCTGCTAAGGATTTTAATGATGCTCCGGCCAGACCTATACGAAATGCTGATCCTTCCGTAAATAACGTAAGTCGACCTCCTGGTTTAAAAACCGTTGAGGATGTCATATCTTTTCACAATGCTGTCGATCATGAAACTATAATGTACTTCTGTCCGgcttgtaatgaaaattttgattccCACGTTTTTTGGCGCAAACACATTGTGGACGAGCACAATTTGAACAGTAGGGAAGGTTTAAATTTCCGTCAATTGGATGAACATCATTATATATGCCTGCAGTGTTATAAACGTGTCACGGTCACACACACTAAAGGCGCAATCGGCCAATTGCAATCACATAAATTTAGACATTTGCCATACAAATCATTTCGCTGCACATCCTGTCAGGCAGAATTTGTTcgcaaacaaatgtttttcaaacatttggATAAAAATACCAACAAGTGTTCGGGTATAAATCCAGAAACTAGTTTCGCTGACAATGCAGATAATAGCACATCAATGAATGATGATGACTTTGACTTAAGTGCTACGTTAGCACTAGGTGACAATTCATATAATGAACGTGATGAAAATAGACCATCGTCTACGAAGTTCTCTTGGCCTACGCGCTCTTCACTGCCAGCTGCATCCAGCGCTACTAATGAcacgaataaagaaaatttaggtTGCTTTACTTTAAATTGTCCTCAATGTGGCGCCGATTTTGAATCAACACGAGATTGGCGTGAGCACATTAATATCGAACACAATCTCAATAACAGaactgtattaaattttaaaaaggtcgGTCCCAAGCTCCACATTTGTTTGGAATGCAACGAACATGTCAACGGCCGAAAATTACGTGATCTACAGGTGCACAAATTCAAGCACTTACCGTACGGAGCCTACTTGCATTGTCGCTTCTGttctatgaaatatttccaCATTAGCAACATGCAAGAGCATCTAAAAAACAAGCATCAAAATATgttgcaaaaaatgaaaaattttgaagaagatTGTGTAACTCTAGATGAAGAAGAGGAATGTGTAACCGATAGTAACACCGATGCTGACGCAGACGACAGTAATACTGGTTTAGATGATGACGTTGTTGATATGGATTTATTAGAGGCAGAGGCCGAAATCGAAGAAGTGGATCCTGATAATGTTGAATCTGATGAACAATATCTTTTAGGTTaa
- Protein Sequence
- MDNLEPWNMFTNDFVPDESNTDEGEDAEIGESEGGVENASFSVVPSPVQGMQVKEEPQDVTDGIYDDDVTNSAVHFLSSNSSNNDSRRVRNADEDDAVFDFGLESSNSYNRIFNKSSTQSSTTEKDTANSAAEDQYYNSMVKYEDAIIYICPACGEEFSSQEMWKNHLNLIHLYNTRRGLNFIQLDKLYHECMECHKRIAMHSMENLLKHKFTHLPYRCSKCMVCKRQYKYRQDLMVHLRISHKNDLIALLKKQHKNQKPQTIRTLLSKSDGFASQSNASNILNNNADNIEVKNELLNDNDDDTLGEDSLPPPPAKRHVKDLPNFLEDGSTNGSSGDQQISNRNRSTVSDDIDASLEEYILFICPQCGTECETQAQWQQHIEFVHEFGTKRGLNFRELLNQAAQCMSCNVILSNSSIRNLQVHKFTHLTHKEWMTCKLCFTSFDTNRDIIKHLAAKHHLISEKKVSKSAPDTVSNDEDSQEAFGFGSGAGFGTADDYDDGTSDSRILSHDSYASKLNERDVFEQHMAYICPACGKEYNDKKVWRKHIVEIHKLGELENLNFEYITDRQLKCRECDKIITNAYGIQNAQQHHMTHMQYKSFAKCRICRKTYTDRKGLMKHLRNAHKIGSRGPTYGEANIGGNNNVAGSGTNFKPFVKKPYRIAHYPPKEIVKLSNYTFEIIHLIEDDDDDNVPSTGSGGYDFAKGDAHLYRNNSPFNTPPKKISIEQISRHRCVDCGSIFQTAQSLQSHVKQEHEFEDYQNSPSQPQVQNEEQSNDTDDLLVPSRDVDVQPEERMTMDCNFIYLCPQCGVEFRSQNEWRRHINVVHNFDKREYLGFRPLDKFRYQCKLCKDTLTSSKLKGLQDHKFRHCPYKLYLKCVLCGQSYNHKPNMIAHLRQRHNIVDIIDGGVSISTDSSLQRHSSSSNNSISAKDFNDAPARPIRNADPSVNNVSRPPGLKTVEDVISFHNAVDHETIMYFCPACNENFDSHVFWRKHIVDEHNLNSREGLNFRQLDEHHYICLQCYKRVTVTHTKGAIGQLQSHKFRHLPYKSFRCTSCQAEFVRKQMFFKHLDKNTNKCSGINPETSFADNADNSTSMNDDDFDLSATLALGDNSYNERDENRPSSTKFSWPTRSSLPAASSATNDTNKENLGCFTLNCPQCGADFESTRDWREHINIEHNLNNRTVLNFKKVGPKLHICLECNEHVNGRKLRDLQVHKFKHLPYGAYLHCRFCSMKYFHISNMQEHLKNKHQNMLQKMKNFEEDCVTLDEEEECVTDSNTDADADDSNTGLDDDVVDMDLLEAEAEIEEVDPDNVESDEQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01315911;
- 90% Identity
- iTF_01315060;
- 80% Identity
- -