Sper005826.1
Basic Information
- Insect
- Sarcophaga peregrina
- Gene Symbol
- -
- Assembly
- GCA_014635995.1
- Location
- CM025790.1:4169267-4174297[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 1.8 1.4e+02 3.9 5.9 1 23 223 246 223 246 0.90 2 23 0.12 9.4 7.5 3.3 1 23 252 275 252 275 0.94 3 23 0.00017 0.013 16.5 1.3 2 23 300 321 299 321 0.96 4 23 0.0093 0.74 11.0 1.2 1 23 398 421 398 421 0.96 5 23 0.0018 0.14 13.3 4.8 1 23 428 450 428 450 0.99 6 23 4.2 3.3e+02 2.7 0.2 2 19 459 476 458 479 0.91 7 23 0.00028 0.022 15.8 0.1 1 23 493 515 493 515 0.98 8 23 0.00017 0.014 16.5 1.8 2 23 528 549 527 549 0.97 9 23 0.0031 0.25 12.5 1.0 1 23 629 652 629 652 0.95 10 23 0.0039 0.31 12.2 0.3 1 21 659 679 659 680 0.95 11 23 0.18 15 6.9 1.0 2 23 692 714 691 714 0.96 12 23 0.0071 0.56 11.4 1.3 2 23 729 750 728 750 0.97 13 23 1.3e-07 1e-05 26.3 0.4 2 23 757 778 756 778 0.97 14 23 9.2 7.3e+02 1.6 1.8 2 23 810 831 809 831 0.82 15 23 0.31 25 6.2 3.8 1 23 923 947 923 947 0.95 16 23 2.6 2.1e+02 3.3 3.4 1 21 954 974 954 975 0.93 17 23 0.089 7 7.9 0.2 5 23 1021 1040 1018 1040 0.91 18 23 0.077 6.1 8.1 3.4 1 23 1047 1069 1047 1069 0.96 19 23 0.0037 0.3 12.3 0.2 2 19 1096 1113 1095 1115 0.94 20 23 0.00022 0.017 16.1 1.8 1 23 1167 1190 1167 1190 0.98 21 23 0.15 12 7.2 0.6 1 23 1227 1250 1227 1250 0.94 22 23 0.41 32 5.9 4.7 1 23 1275 1298 1275 1298 0.94 23 23 0.047 3.7 8.8 3.8 3 21 1326 1344 1324 1346 0.92
Sequence Information
- Coding Sequence
- ATGGATAACTTTAATGTTGAAGAATGTTTTATTAATGGCATTCAGTACAAATGTCGTACTTGCTTTAATCCTGGAGCAACTGTGTGTTCTTTGAATGAGGAAGTTGAAAATGCAAAAACCCGGCTAGATTTATTAAAGGAGGCGGGTCAACTAAAGATATCAGCTCATGATGATTTATTACCGCAGACTATGTGTTGTGTATGTTCTGAAAAGCTTAAAATCTCTTATGATTTCCTACTGCAGATTCGTGATGTAAATAGgaaatttctaatattattgAATACAACAGAAGATCCGCTACAGAATGGTTTTGATGAACAATTGTCCGATTTTTTGAAGGAACCAACCATTGATTTACCGATGCCAGATTATATATcagaaataaaattggaaattgaagACGACCCTTGCGCCATTTTGGAACATGAAGAAAACGATAAATCCATTTCAGAAAACGAACTGATTGTATTTGACCCTGAACACTCTAATGACTGCAAACAGTATAAAACAAGCAAACCATTGGAGGATAGTGATTATAGACCGAACAAACGGTTGAACGAAGAAAATGACAGCGTTGAAAGCATAACacCGCCCGccaaaaaacagcaaaaagatAGACGAAAAGTATCGGAGtattatgataaaattaaaaagattaacGATCGTTATGTATGTTTCGTATGCCAAAAATCATACTCATTCAGGCACAATTGCGTGCATCATATTGTTAATGTACATAATCgtccaaaaaattttctttgtgaaTTTTGTGGTGAAAAATTTGGTAGTAAGAGAGAAAAATGTGAACACATCAAACGTTTCCATCCGAGATCCaaacaaaggaaatttttattcgGCAATCGTTTGTATAGCAAACCAGCAAAGTGGCAACTAGTCGAATGTAAATTGTGTAATACAACCTTTAGCACAACTAAAGATCTCAGAAACCACTTGTTACAGCACAGCAGAATAGATACTCTTGATAAGTTAGATTTTAACAATCAAATTGTCCAGCATTTATTTGCACATACAAACGATTTAAATGCAGTAAAAGAAAGTATACGTTGTGACATCCACGAGAAACAGTGGTTTAAATACTACAATGTCTTAAACGAATATTCATTGGAAATGTCTATTACTGATACGGAGGTAGAAGATTTGGAAGATGATGCCACACAGCAGGATAGCAAATATAAATGTGAGCTGTGTAATCAacagttttcatttaaatttcaagcTTTTGCTCACTTAAAAGAGGCGCACGAAGAGGAGGAGGCGCCTTACACATGTAATTTGTGTAAAACGGAATTTGTATCGTTGAAAATGTTTCAACACCATACTCGAACACATTGCCGCAATAAACACAAAATGATGGTGTGTACAAACTGCCCGGCTAAATTTATATGGCCCGATAATATGAAAAATCACAATTGTGTCGCTAAAGTTGTGGTCTCTTCGATCACAGATAATAAGGATTATAAGTGTACTATATGTGATCGGGTATTTGAGGAAGTGGctgaatatgaaaaacatttagaATCTCATAAACCGGGCAGCAAAGTGTCTAAAAAAGCTATAATCCAGTGCGGTCTGTGTAAAAAATCCTTTAAGAAAATCTCACAACTGAGAGATCATATTCATGTACATGCTGATGGCATAACAGGTATTGACTTCCAAAACAGCATTTACGTAAATATTTTCGAAAGGTCAAAATATCTTGATTTTGGCCTGCTTCAACTGGAAATACAAAAAGCTTACCGAAGATCTCAAATTGGTCGTTACTATCGCATCTTAGATAAAAATGGATATGAAATGGATATTTTAGATTCAGATTCTGCTGAAGAAGATTCGGAAGTTTTTAATAAACAGAAGATAAAAAAGATATACAAATGTGAACTTTGTagcgaaatatacaaaaaacgcAAACTGCTGCTAAAACATCAGTCTGAAATACACAATGACGTGCCTCTGCCATACACTTGTGATTCCTGTACCCAACAGTTTGTCAGCAATGATTTGTTACAGCAGCATTTGTTAAGAGATTGTTTAAATGAACATCGTCGTGCAGCTACACAATGTGAATTTTGTAAGGCACGATTTATATGGCCAAATAATCTCTTCAAACACAAAAACATGCAGCACAAACACCAAAAGAATCTACGAGCCGAAAAAGTGAGAACACTCAAGTGTGAGTTttgtgaaaaagttttcatatggCACAAAGATTTGGTTCGTCATCAAAAAGTCCATACAGAAGTTAAAAGACTGCCGTGTCCACATTGTGGACGTGTGTTTGCACGCAAAGATTACCTGTTATCACATATGCGTATACATAACGCCACAACCCTGTCTATTACTTTAAATTCCAACAGAACTTTGGACTATATACTGCCACATCTACTGAAACCTCATGGttgcaaacaaatcaaatgtaTGATCTGCTATTCAGAACACATTCGTCTACGTGATTTACGTTCCCATTTAAGATCACATCGTTACAccattaatttcgaaaaaagaaaagaaactgaaaCTCTCGACACCATATCAGCACAATTATATCCAGACGAAACGGTCATGTGTGAAGAAGATTTAACAAAACGTATCCAATCAGACATTGCTGCTGAAAAGAATTTGGAACGATTTTATTccataacaaatgaaaatggcTGTGAAGTGAATTTGGACAGTTCAGAGACAGAGACGGACACTTCAGATAACGAGGAGGATAACAGCAAAGAGGACCAATTGCAACTGTCAGGACATTATACGTGTGATTTATGTCCTTCACTTAGTTTTAATcggaaatttaaacttttcaaacaTCATAATGAAAACCATACATGGGAAGAAGCTCCACATGTTTGTACACATTGTAATGGTCGTTTCTTATCCAACCATATGTTGCAGCTACACTACAAGAGTCAatgtaaaaatacaataaaaagacACTTTTGTCGTCGTTGTCCGCTGGTTTTCATGTGGGAAAAGAATCTTCAACTTCATTTTATAATGGAACATGGCCAAGAAACTAATTCAAAACGCCGCGTTGCTTGTATTATTTGCGAGGAGGAATTCGCCAATCAGTGGAAAATGAAACGTCATATGAGCCAATCTCAttctaatgatgatgatgtccaTTATTGTCTTTTCTGTCCGAGAACATTTTATAACATTGCCCATCTCGACGAACATTTAACACGTCATCCTATTACCGAGGTTGACGTTCAAACGGCTGAGGTCATATTAAATTCCACCTGTTGGCCAAATAAcgataaaattatcaaatgtaAATTATGTGGTCAAACATTTGATTCTATGGCCAActtaaatgaacatttttcacCCTTGTATTCACAAAACTTGTGTGCTACACAACATTCTCTCGCCAATTATTCGATAACAAATCAAAAAGGTTTTGAATTGCATTTAGAAATGGATTCGGAATCAGAGATAGAAGACGAAATAAACACTGGGGGCCAACAAAAACTACATTCGTATACTTGTTACTTGTGCGATGTATCGTATAGACGAAAATATCAAATGGCTCAGCACCAACGTTCCATGCACAATTATGAAGATCTAGCTTTAAAATGTGAGCGTTGCATATTTCGAACGGTGTGTCAGACAATTTTAGACTACCACCAGTCGACCCAATGTTTTAATGAAGAAAAGCAATACGAATGTAGTgattgcaaatttaaatttatgtggCAAGAAAATCTCGATAATCATGTATCCATATTTCATTCAGCAAAGGATGAATGTCCGGAGGAAGAGAAAACTGTACAACAGACAAAGAGTAAAAATATTCCTTATGTTTTTGAATGCATGGCTTGTCGTCGTCGCTTTTCTCATAAAGCAAGTTATAGGATGCATTTTAAAAACACTCACTTCAGTGATAACCAACTAACAAACGACAGTAACACAAAATCAACCAAAAACATCccattaaaaactgaaaacaaacatCTCTGTGCCTTCTGTGGAATGTCGTTTCCGTATCATTCCCTTCTCTTGATTCATATGCGTTGTCACAATGGCGGAAAGTCATTTAAggaataa
- Protein Sequence
- MDNFNVEECFINGIQYKCRTCFNPGATVCSLNEEVENAKTRLDLLKEAGQLKISAHDDLLPQTMCCVCSEKLKISYDFLLQIRDVNRKFLILLNTTEDPLQNGFDEQLSDFLKEPTIDLPMPDYISEIKLEIEDDPCAILEHEENDKSISENELIVFDPEHSNDCKQYKTSKPLEDSDYRPNKRLNEENDSVESITPPAKKQQKDRRKVSEYYDKIKKINDRYVCFVCQKSYSFRHNCVHHIVNVHNRPKNFLCEFCGEKFGSKREKCEHIKRFHPRSKQRKFLFGNRLYSKPAKWQLVECKLCNTTFSTTKDLRNHLLQHSRIDTLDKLDFNNQIVQHLFAHTNDLNAVKESIRCDIHEKQWFKYYNVLNEYSLEMSITDTEVEDLEDDATQQDSKYKCELCNQQFSFKFQAFAHLKEAHEEEEAPYTCNLCKTEFVSLKMFQHHTRTHCRNKHKMMVCTNCPAKFIWPDNMKNHNCVAKVVVSSITDNKDYKCTICDRVFEEVAEYEKHLESHKPGSKVSKKAIIQCGLCKKSFKKISQLRDHIHVHADGITGIDFQNSIYVNIFERSKYLDFGLLQLEIQKAYRRSQIGRYYRILDKNGYEMDILDSDSAEEDSEVFNKQKIKKIYKCELCSEIYKKRKLLLKHQSEIHNDVPLPYTCDSCTQQFVSNDLLQQHLLRDCLNEHRRAATQCEFCKARFIWPNNLFKHKNMQHKHQKNLRAEKVRTLKCEFCEKVFIWHKDLVRHQKVHTEVKRLPCPHCGRVFARKDYLLSHMRIHNATTLSITLNSNRTLDYILPHLLKPHGCKQIKCMICYSEHIRLRDLRSHLRSHRYTINFEKRKETETLDTISAQLYPDETVMCEEDLTKRIQSDIAAEKNLERFYSITNENGCEVNLDSSETETDTSDNEEDNSKEDQLQLSGHYTCDLCPSLSFNRKFKLFKHHNENHTWEEAPHVCTHCNGRFLSNHMLQLHYKSQCKNTIKRHFCRRCPLVFMWEKNLQLHFIMEHGQETNSKRRVACIICEEEFANQWKMKRHMSQSHSNDDDVHYCLFCPRTFYNIAHLDEHLTRHPITEVDVQTAEVILNSTCWPNNDKIIKCKLCGQTFDSMANLNEHFSPLYSQNLCATQHSLANYSITNQKGFELHLEMDSESEIEDEINTGGQQKLHSYTCYLCDVSYRRKYQMAQHQRSMHNYEDLALKCERCIFRTVCQTILDYHQSTQCFNEEKQYECSDCKFKFMWQENLDNHVSIFHSAKDECPEEEKTVQQTKSKNIPYVFECMACRRRFSHKASYRMHFKNTHFSDNQLTNDSNTKSTKNIPLKTENKHLCAFCGMSFPYHSLLLIHMRCHNGGKSFKE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01314069; iTF_01315776;
- 90% Identity
- -
- 80% Identity
- -