Basic Information

Insect: Sarcophaga peregrina
Gene Symbol: -
Assembly: GCA_014635995.1
Location: CM025790.1:61231712-61233668[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.7e-05 0.0013 19.6 0.9 2 23 319 341 318 341 0.95

2 9 2.7e-07 2.2e-05 25.3 1.9 1 23 374 397 374 397 0.97

3 9 0.00012 0.0096 17.0 4.2 1 23 406 428 406 428 0.98

4 9 0.00023 0.018 16.1 0.8 1 23 434 457 434 457 0.97

5 9 0.043 3.4 8.9 0.2 2 23 462 483 462 483 0.95

6 9 0.00074 0.059 14.5 0.4 2 23 492 514 491 515 0.94

7 9 0.0014 0.11 13.6 0.1 1 23 521 544 521 544 0.96

8 9 2.6e-05 0.0021 19.1 0.1 1 23 550 572 550 572 0.99

9 9 5.6e-05 0.0044 18.0 6.6 1 23 578 601 578 601 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.7e-05	0.0013	19.6	0.9	2	23	319	341	318	341	0.95
2	9	2.7e-07	2.2e-05	25.3	1.9	1	23	374	397	374	397	0.97
3	9	0.00012	0.0096	17.0	4.2	1	23	406	428	406	428	0.98
4	9	0.00023	0.018	16.1	0.8	1	23	434	457	434	457	0.97
5	9	0.043	3.4	8.9	0.2	2	23	462	483	462	483	0.95
6	9	0.00074	0.059	14.5	0.4	2	23	492	514	491	515	0.94
7	9	0.0014	0.11	13.6	0.1	1	23	521	544	521	544	0.96
8	9	2.6e-05	0.0021	19.1	0.1	1	23	550	572	550	572	0.99
9	9	5.6e-05	0.0044	18.0	6.6	1	23	578	601	578	601	0.98

Sequence Information

Coding Sequence: ATGTCTGCTGCTGCTCCATCATTGTGTCGTTTATGCATTCAAGCCTACACAGATTGTAAAAGTCTCTTTGATGAGCTAGGTCAAGGAAATGAAGTTTACGAAATGACTGTGAAATATTTTGATCCTATGTTCCTCAGTTCGCAACAATATCCCCAACTGTCTATGGTTATATGTATGAAATGCTGGGATCATATAAACGACTTTCACACTTTCCAACAGTCTGTCCTCAACGCTCAAACAAGGTTTGAACAAGATTTCAAACATATTGTAAGCAATATTAAAATGGAGGAAGATGTATTAGCCGAATCCTCTGACATGAACATGAATGCGGAAACAGCTCAGGATGAATTGTTTCCTAATGTTTTTAGTAATATGGGCATAGATGTCGAGGAGAAAGGTGACATATTTTTGCCAGATATTGAagtgaaagaaatgaaatatgacCATGACAATCCCTTTACAACGGATGATGAGAAACCCTTAGTCAATAGTTTAAATACGAGCACAAGAAAGAAACGTGGTCGAAAACCGAAAACTGAAATACAAATGGATAGTGATCCACTTCCCGCCAAACGGGGTAGGAAACCAAAAACTAAAAGCAGTACCGAAAATTCAGTACAAGCAAAATCCGTTACCAAGCGCCGAACCAAAAGGAGAACTTCTGAAGAAAAAGAGCTCGAGCAACCGCTCAAGATAGAGACAAATAACTTAGCCGAAGTTAATCAAAACATATTAACGACAGTGAATAATAAACAAGAGTCTCATGCGTCttcaaatgatgatgatgaggatgatgatgacgattatTACAACAATGATAATGACAATGACAgtgataataataatcatcaGGCGGACCCAGATGGATTTGTATCTTCAAACGATAAGCAAAAATCAGGCAAGCAAAAAACTGCCGAAATAGATGCATTTATTGCTGAATGGAAACAAGAGCTAGAGTGCGACATTTGCAATCAATCCTTTAGCAATCTAACACAGTTAAGAAAGCATTTTAATAGCGAACATCCCAAGCAAAAATGCTATGTGTCCTGCTGCCAACGTAAACTAAAACATCGTTTCGATATAGTTGAACATATCCGTTATCACATAGACCCAAATACGTTCAAATGCACCATATGTGATAAAGTCTCTACCAACAGTCGCAATTTGAATAAACACATGCGTGAAAAACACACAGCAGAGGGACAAGAGCGTCCGTTTGAGTGTTCTGTATGCCAAAAGCGTTTTGCTAAAAAATGCACACTCAAAACCCATTTGGAGACACATGATACGGGGAAGGATTACAAGTGTAGTGAGTGTGGCAAGGGTTTTTCCACAGAACAACGGCGGAAAATTCATGAACGCATGGTTCATAATGTGGATAGGGTATGTGACCAATGTGGCAAAACTATACATGGTGTTTATGCACTGAAGCAACACATACTCGAGCATGCTGGCATTAAAAAACGCAAATGGCCATGCGATCAATGTAATGCCGAACTGAATTCACGTTCCAGTTTAAAACGCCACATGAATGCAGCACATCATGATGGTTCTacagtgtatgtgtgtagtGAATGTGGCAAAATTGCTCCAACCGAAACAGCCTTGCGAAGTCACAAAAAATATGTCCATCAGGCAGAGCGTAAATTTAAATGCACCATTTGCGATAAAGGTTTTAAAGTAGCCATAGTTTTACGCGAACACATGGCTACGCATACCGGAGAAGAACTGTACAAGTGTCCACATTGTCCAAAAACATTTAAGGTAAATGCCAATATGCACCATCATCGAAAGAAGGCACATCCAAAGGAATGGGCTGAAGCTAGAATAAATAAACCAATAGTAACTAAAGTGGACGTTAATTTAGTATCAAATGAAGTTGTAATTTAA
Protein Sequence: MSAAAPSLCRLCIQAYTDCKSLFDELGQGNEVYEMTVKYFDPMFLSSQQYPQLSMVICMKCWDHINDFHTFQQSVLNAQTRFEQDFKHIVSNIKMEEDVLAESSDMNMNAETAQDELFPNVFSNMGIDVEEKGDIFLPDIEVKEMKYDHDNPFTTDDEKPLVNSLNTSTRKKRGRKPKTEIQMDSDPLPAKRGRKPKTKSSTENSVQAKSVTKRRTKRRTSEEKELEQPLKIETNNLAEVNQNILTTVNNKQESHASSNDDDEDDDDDYYNNDNDNDSDNNNHQADPDGFVSSNDKQKSGKQKTAEIDAFIAEWKQELECDICNQSFSNLTQLRKHFNSEHPKQKCYVSCCQRKLKHRFDIVEHIRYHIDPNTFKCTICDKVSTNSRNLNKHMREKHTAEGQERPFECSVCQKRFAKKCTLKTHLETHDTGKDYKCSECGKGFSTEQRRKIHERMVHNVDRVCDQCGKTIHGVYALKQHILEHAGIKKRKWPCDQCNAELNSRSSLKRHMNAAHHDGSTVYVCSECGKIAPTETALRSHKKYVHQAERKFKCTICDKGFKVAIVLREHMATHTGEELYKCPHCPKTFKVNANMHHHRKKAHPKEWAEARINKPIVTKVDVNLVSNEVVI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01315735;
90% Identity: iTF_01313185; iTF_01315735; iTF_01314058;
80% Identity: -