Basic Information

Insect: Sarcophaga carnaria
Gene Symbol: -
Assembly: GCA_958299815.1
Location: OY283149.1:90715608-90717559[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 7.1e-05 0.0075 17.7 1.0 2 23 318 340 317 340 0.95

2 9 2.8e-07 2.9e-05 25.3 1.9 1 23 373 396 373 396 0.97

3 9 0.00012 0.013 17.0 4.2 1 23 405 427 405 427 0.98

4 9 0.00023 0.025 16.1 0.8 1 23 433 456 433 456 0.97

5 9 0.043 4.5 8.9 0.2 2 23 461 482 461 482 0.95

6 9 0.00074 0.078 14.5 0.4 2 23 491 513 490 514 0.94

7 9 0.0014 0.15 13.6 0.1 1 23 520 543 520 543 0.96

8 9 2.6e-05 0.0027 19.1 0.1 1 23 549 571 549 571 0.99

9 9 5.6e-05 0.0059 18.0 6.6 1 23 577 600 577 600 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	7.1e-05	0.0075	17.7	1.0	2	23	318	340	317	340	0.95
2	9	2.8e-07	2.9e-05	25.3	1.9	1	23	373	396	373	396	0.97
3	9	0.00012	0.013	17.0	4.2	1	23	405	427	405	427	0.98
4	9	0.00023	0.025	16.1	0.8	1	23	433	456	433	456	0.97
5	9	0.043	4.5	8.9	0.2	2	23	461	482	461	482	0.95
6	9	0.00074	0.078	14.5	0.4	2	23	491	513	490	514	0.94
7	9	0.0014	0.15	13.6	0.1	1	23	520	543	520	543	0.96
8	9	2.6e-05	0.0027	19.1	0.1	1	23	549	571	549	571	0.99
9	9	5.6e-05	0.0059	18.0	6.6	1	23	577	600	577	600	0.98

Sequence Information

Coding Sequence: ATGTCTTCTGCTGCTCCATACTTGTGTCGTTTATGCATTGAAGCCTACACAGATTGTAAAAGTCTCTTTGATGAGCTGGGACAAGGAAATGAAGTTTACGAAATGACTGTGAAATATTTCGATCCTATGTTCCTCAGTTCTCAACAATATCCCCAACTGTCTATGGTTATATGTATGAGATGCTGGTATCACATAAACGACTTTCACACTTTCCAGCAGTCTGTCCTCAACGCTCAAGCAAGGTTTGAACAGGATTTCAAACATATTGTAAGCAATATCAAAATGGAGGAAGATGTGTTAGCCGAATCCGCTGAAACGAACATGAATGCGGAAACGGCTCAGGATGAATTATTTCCTAATGTTTTTAGTAATATGGGTATAGATGTCGAGGAGAAAggtgaaatatttttgccagatattgaagtgaaagaaatgaaatatgacAATGACAATCCCTTTACAACGGATGACGAGAAACCCTTAGTCAGTAGTCTAAACACGAGCACAAGAAAGAAACGTGGTCGAAAACCGAAAACTGAAATTCAATTCGACAGTGATCCACTTCCCGCCAAACGTGGTaggaaaccaaaaaataaaagcgGTACAGAAAATTCAGTTCAAGTAAAATCCGTAAACAGGCGTCGAACCAAAAGGAGAACTTCTGAAGAAAAAGAGCTGGAGCAACCACTCAAGATAGAGACAAATAACTCAGCCGAAGTTACTCATGAAATATTAACGACTGCGAATAATAAACAAGAGTCTCATGCGTCttcaaatgatgatgatgatgacgatgacgattattacaacaatgataatgacaatgacagtgataataataatcatcagGCGGACCCAGATGGGTTTGTATCTTCAAACGATAAGCAAAAATCAGGCAAGCAAAAAACTGCCGAAATAGATGAATTTATTGCTGAATGGAAACAAGAGCTAGAGTGCGACATTTGTAATCAATTCTTTAGCAATCTAACACAGTTAAGAAAGCATTTTAATAGTGAACATCCGAAACAAAAATGCTATGTGTCCTGCTGCCAACGTAAACTAAAACACCGTTTCGATATAGTTGAACATATCCGTTATCACATAGACCCAAATACGTTCAAGTGCACCATATGTGATAAAGTCTCTACCAACAGTCGCAATTTGAATAAACACATGCGTGAAAAACACACAGCAGAGGGACAAGAGCGTCCGTTTGAGTGTTCTGTATGCCAAAAGCGTTTTGCTAAAAAATGCACACTCAAAACCCATTTGGAGACACATGATACGGGGAAGGATTACAAGTGTAGTGAGTGTGGCAAGGGTTTTTCCACAGAACAACGGCGGAAAATTCATGAACGCATGGTTCATAATGTCGATAGGGTATGTGACCAATGTGGCAAAACTATACATGGTGTTTATGCACTGAAGCAACACATACTCGAACATGCTGGCATTAAAAAACGTAAATGGCCATGCGATCAATGTAATGCCGAACTGAATTCACGCTCCAGTTTAAAACGCCACATGAATGCAGCACATCATGACGGTTCCACAGTGTATGTGTGTAGTGAATGTGGTAAAATTGCTCCAACTGAAACAGCTTTGCGAAGTCACAAAAAATATGTCCATCAAGCAGAGCGTAAATTTAAATGCACAATTTGCGATAAAGGTTTTAAAGTAGCCATTGTTTTACGCGAACACATGGCTACGCATACGGGGGAAGAGCTGTACAAGTGTCCACATTGTCCAAAAACATTTAAGGTAAACGCCAATATGCATCATCATCGAAAGAAGGCACATCCAAAGGAATGGGCTGAAGCTAGAATAAATAAACCAATAGTAACTAAAGTGGACGTTAATTTGGTATCAAATGAAGTTGTAATCTAA
Protein Sequence: MSSAAPYLCRLCIEAYTDCKSLFDELGQGNEVYEMTVKYFDPMFLSSQQYPQLSMVICMRCWYHINDFHTFQQSVLNAQARFEQDFKHIVSNIKMEEDVLAESAETNMNAETAQDELFPNVFSNMGIDVEEKGEIFLPDIEVKEMKYDNDNPFTTDDEKPLVSSLNTSTRKKRGRKPKTEIQFDSDPLPAKRGRKPKNKSGTENSVQVKSVNRRRTKRRTSEEKELEQPLKIETNNSAEVTHEILTTANNKQESHASSNDDDDDDDDYYNNDNDNDSDNNNHQADPDGFVSSNDKQKSGKQKTAEIDEFIAEWKQELECDICNQFFSNLTQLRKHFNSEHPKQKCYVSCCQRKLKHRFDIVEHIRYHIDPNTFKCTICDKVSTNSRNLNKHMREKHTAEGQERPFECSVCQKRFAKKCTLKTHLETHDTGKDYKCSECGKGFSTEQRRKIHERMVHNVDRVCDQCGKTIHGVYALKQHILEHAGIKKRKWPCDQCNAELNSRSSLKRHMNAAHHDGSTVYVCSECGKIAPTETALRSHKKYVHQAERKFKCTICDKGFKVAIVLREHMATHTGEELYKCPHCPKTFKVNANMHHHRKKAHPKEWAEARINKPIVTKVDVNLVSNEVVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01315735;
90% Identity: iTF_01314878;
80% Identity: -