Sper006881.1
Basic Information
- Insect
- Sarcophaga peregrina
- Gene Symbol
- -
- Assembly
- GCA_014635995.1
- Location
- CM025790.1:34681829-34685283[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.9 2.3e+02 3.2 0.0 2 23 218 239 217 239 0.94 2 19 0.077 6.1 8.1 5.7 1 23 245 268 245 268 0.92 3 19 0.059 4.7 8.5 0.5 1 23 281 304 281 304 0.96 4 19 0.0016 0.13 13.4 0.3 1 21 351 371 351 372 0.96 5 19 0.02 1.6 10.0 2.6 1 23 401 422 401 422 0.97 6 19 0.0027 0.22 12.7 1.7 2 23 437 458 436 458 0.94 7 19 0.0013 0.1 13.7 1.3 1 23 467 490 467 490 0.95 8 19 6.8e-05 0.0054 17.7 0.6 3 23 497 517 496 517 0.97 9 19 1.3e-05 0.0011 20.0 2.1 2 23 523 544 522 544 0.97 10 19 0.0068 0.54 11.4 2.2 1 23 550 572 550 572 0.98 11 19 0.0028 0.22 12.7 3.1 1 23 577 599 577 599 0.94 12 19 0.096 7.6 7.8 1.9 1 23 604 627 604 627 0.97 13 19 1 81 4.6 0.2 9 23 629 644 628 644 0.93 14 19 6.3e-05 0.005 17.9 2.6 1 23 649 672 649 672 0.97 15 19 3.4e-05 0.0027 18.7 0.6 1 23 678 700 678 700 0.98 16 19 6.4e-08 5.1e-06 27.3 0.8 1 23 705 727 705 727 0.99 17 19 0.0002 0.016 16.2 4.4 1 23 733 755 733 755 0.98 18 19 0.041 3.2 9.0 2.1 1 23 760 782 760 782 0.95 19 19 0.17 14 7.0 0.8 1 23 787 811 787 812 0.96
Sequence Information
- Coding Sequence
- atgaaacgaCGATGTCGTTGTTGTTTAGCCACAAATGCCGATATGTATGTTGATATTTTTGAACAACATAAATCTGGAGCGACTTATGCAGAGAATATACGATATTTAGCTGAAGTACAAGTGGAACATGATGATGGTCTACCGCAGCAAATATGCTCCAGTTGCTGTAATGAACTTCATCAAATATATGAATTTGGAATTAGTGTACGGTTGTCGGATGAAAAACTCAGGCGAGAAATGATGGCCTCTAACAAAAATCGAACGGAGGAGGAGGATGAAGTTCACATGGAAAATGTACAAGTTTtggaaaatgaatatttttcaccGGTAGATGAAAACGGCATACAAGTATGTGTCATAGAAGAGATATTAGAGCAGGAAGCAGAACGGGAGGACGTTATCGTAGAGGAAATTCACGAAGTGGAAGAAATTAATATAATGGAAGAATTGTTAGAGGTTGGAAAAGAACCCAAAGAAAACTTATTGGCAAGCCTGGCACAAGTGGCTTCCACACAAGAAAACGTCAACATTACTATTAGCAATCCAAGCGTATCTAATGAAGCCTTATGTTTTCCTGAAGATGAATTGGATGACgattatttaataaagtttaatgaaaatgaagtaAATTCGTATAAACCACCCAAGTGGAAATGTGGCGAATGTCAACTCATATTGCGTGGAGATGTTTCCTATGAAGGCCATATGAACATGCACAAACAATTAAGGCCACACCAATGTCCAGACTGCCAAACTAAATTTAGATGTCGCACAGCTCTAAAACGACACAAAGAATTAAGACACTCCAAGAGTTTAAGTAaagaagatattaaaataacCTATACATGCAGAGATTGTAATAACAGTTTTCTAACCAGTCCCCTATTTAAACTACACCAAATAATCGTCCATAATCAAGGTCAGAAATGTCCATTTGCATGTGATTTAGTTAAAGGCCGTGATAATGTAAAAGAGCATTTAGAACAAATGCATGCTGAACAGTTTGCCACACTCGCTGAAGTATTATTGGCCAATGGCACTTTACCGATTTACCAATGCTTTAAATGCTCTGAAACATTTGAAAAACCAGCTCTGCTGGAAAATCACACAAAAGAGTGCCTAAGTGGGAATGACCAACAGTTACATGAGGATATTCTTTCAGTAGAGACTGATGAAAATATGGAAGAATCTgctgatttatttcaatgtaAAATATGTAGGAGAAAGCTATTgaagaaaaacttaaataagcACATGGAGTTACATAAACGAAAAGAAAGTCGAGAACAGGATGAAACGAGAAAGTTTTTGTGTGCCTTTTGTCCGCGCGAATTTAAAAACGCCAAATCACTACATCAACACGAAAAAATCCATCAAGGTGAACGATTGGATATCGTATACGCTTGTTCTGATTGTGATCGTCAATACGCTTCGCAATATTTATTGGATACCCATCGTAAACATGCACATAAAGAACGTGATAATATTTGTAACATATGTGGTAATGCCTTTAAGATGAAAAATCAATTAATGAATCATATGAAACTCCATTTGGAAAAGAATATACCGTGTCCACATTGTGATAAAAAATATGCCCGGCACTTTGACTTAAATGTACACCTAAGATCTCATACGGGTGAATTGCCATATGCATGTCATTTGTGTGAAAAGCGTTTTGCCATTAAGGTGCGGCTCACCTATCACTTGCAGAAACACTATGGCATTAAACATTATTGTAAGGAATGTGGTGCTGAGTTCaattccaaacaaaaattaaaagcacaTTCATTTAAACACACTGGCATGCCATATCGTTGTGAACTATGTGATGATCATGGATTTGCTACCCGCAATACttttaagcgCCACTTAGGATCGCATATTTCCTTCGCCAATGTCGATCATTTATACAAGCATATTTCAACAGAACACTATCGGCTATTGCATGAATGTCCACAGTGTAATGAAAGCTTTTCACATTTAAAACTTCTTCAGGAGCATGAAAGAAAGGTTCATACGATAAGACGTGTCTATAAGTGCAAGATATGTGGCAATAATTTTCGAGGACAAGCTCAATTGTCGGCTCATAAAAGATTGCATAAAGAGCGtccatttaaatgtgaacaatGTGATAAATCTTATCCGCGCAAAGTAGATCTTCAGATACATATGCGCACACATACAGGGGAGCTGCCTTATGAATGCCACTTATGTGATAAACGCTTCGCCATTAAAGTCCACTTGACATATCACCTGCAAAAACATGAAGGCATTCAACATGCCTGCACATTCTGTTCAGCTGTCTATGATAATCGTAATAAACTAAAAGCCCACTTGTTTAAACACACCGGCATGCCGTACAAATGTGAAATTTGTCCTGGTATCGGGTTTGAAAGAAGAATAAGattttCTAATCATATGCAGAGAGTACACCATAAAACCCTAAGCAAAGAAGAATTGGCAGAAATTTTTGCCAAGAATACAGGCAAAACTGTCCATTTCAAACAAACTGGaagttaa
- Protein Sequence
- MKRRCRCCLATNADMYVDIFEQHKSGATYAENIRYLAEVQVEHDDGLPQQICSSCCNELHQIYEFGISVRLSDEKLRREMMASNKNRTEEEDEVHMENVQVLENEYFSPVDENGIQVCVIEEILEQEAEREDVIVEEIHEVEEINIMEELLEVGKEPKENLLASLAQVASTQENVNITISNPSVSNEALCFPEDELDDDYLIKFNENEVNSYKPPKWKCGECQLILRGDVSYEGHMNMHKQLRPHQCPDCQTKFRCRTALKRHKELRHSKSLSKEDIKITYTCRDCNNSFLTSPLFKLHQIIVHNQGQKCPFACDLVKGRDNVKEHLEQMHAEQFATLAEVLLANGTLPIYQCFKCSETFEKPALLENHTKECLSGNDQQLHEDILSVETDENMEESADLFQCKICRRKLLKKNLNKHMELHKRKESREQDETRKFLCAFCPREFKNAKSLHQHEKIHQGERLDIVYACSDCDRQYASQYLLDTHRKHAHKERDNICNICGNAFKMKNQLMNHMKLHLEKNIPCPHCDKKYARHFDLNVHLRSHTGELPYACHLCEKRFAIKVRLTYHLQKHYGIKHYCKECGAEFNSKQKLKAHSFKHTGMPYRCELCDDHGFATRNTFKRHLGSHISFANVDHLYKHISTEHYRLLHECPQCNESFSHLKLLQEHERKVHTIRRVYKCKICGNNFRGQAQLSAHKRLHKERPFKCEQCDKSYPRKVDLQIHMRTHTGELPYECHLCDKRFAIKVHLTYHLQKHEGIQHACTFCSAVYDNRNKLKAHLFKHTGMPYKCEICPGIGFERRIRFSNHMQRVHHKTLSKEELAEIFAKNTGKTVHFKQTGS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01314152; iTF_01315826;
- 90% Identity
- -
- 80% Identity
- -