Scar007657.1
Basic Information
- Insect
- Sarcophaga carnaria
- Gene Symbol
- -
- Assembly
- GCA_958299815.1
- Location
- OY283149.1:132313679-132316265[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.3 2.4e+02 3.5 0.0 2 23 217 238 216 238 0.95 2 12 0.061 6.4 8.5 5.7 1 23 244 267 244 267 0.92 3 12 0.43 45 5.8 0.4 1 23 280 303 280 303 0.91 4 12 0.011 1.2 10.8 0.5 1 21 350 370 350 371 0.96 5 12 0.016 1.7 10.3 2.6 1 23 400 421 400 421 0.97 6 12 0.0022 0.23 13.0 1.7 2 23 436 457 435 457 0.94 7 12 0.0049 0.52 11.9 1.1 3 23 468 489 466 489 0.95 8 12 3.9e-05 0.0041 18.5 0.6 2 23 495 516 495 516 0.97 9 12 1e-05 0.0011 20.3 2.1 2 23 522 543 521 543 0.97 10 12 0.0054 0.57 11.8 2.2 1 23 549 571 549 571 0.98 11 12 0.0022 0.23 13.0 3.1 1 23 576 598 576 598 0.94 12 12 0.17 18 7.0 3.4 1 23 603 627 603 628 0.96
Sequence Information
- Coding Sequence
- atgaaacgaTGTCGTTGTTGTTTAGCCACCAATGCCGATATGTatgttgatatttttgaacAACATAAATCTGGGGCCACCTATGCAGAGAATATACGATATTTAGCTGAAGTACAAGTGGAACATGATGATGGTCTGCCCCAGCAAATATGCTCTAACTGCTGTAATGAATTTCATCAAATATATGAATTTGGAATTAATGTACGGTTGTCGGATGAAAAACTTAGGCAAGAAATGATGGCTTCTAACAAAAATCGAACGGAGGAGGAAGATGAAGTTCATATGgaaaatgtacaagttttggaaaatgaatatttttcacCGATAGATGAGAACGGCATACAAGTATGCGTCATAGAAGAGATATTAGAGCAGGAAGCAGAACGGGAGGATGTTATCGTAGAGGAAATTCACGAAGTGGAAGAACTTAATATGATGGAAGAATTATTAGACGTTGGCAAAGAACCCAAAGAAAACTTATTGGCGAGTTTGGCACAAGTGGCTTCCACACAAGAAAACGTAAACATTACTATTAGCAATCCAAACGCATCTAATGAAGTGTCACATTTCCCTGAAGACGAATTGGATGAGgattatttaataaagtttaatgaaaatgaaatgaatccATACAAACCACCTAAATGGAAATGTGGCGAATGTCAACTCATACTGCGTGGAGATGTTTCCTATGAAGGCCATATGAACATGCACAAACAATTAAGGCCACACCAATGTCCAGACTGCCAAACAAAATTTAGATGTCGTACAGCTCTAAAACGACACAAAGAATTAAGACACTCCAAGACTTTAAGTAAAgaagatattaaaataacttATACATGCAGAGATTGTAATAATAGCTTTCTAAGCAGCCCCGTATTTAAACTACATCAAATAATCGTCCATAATCAAGGCCAAAAATGTCCATTTGCAtgtgatttagttaaaggtcgTGACAATGTAAAAGAGCATTTGGAGCAAATGCATGATGAACAGTTTGTCACATGCGCTGAAGTTTTCTTGGCCAATGGCACTTTACCAATTTACCAATGCTTCAAATGCTCTGAAACATATGAAAAACTAGATCTGCTGGAAAATCACACAAAAGATTGCCAAAGTGGGAATGAGCAACAGTTACAAGAGGATATTCTTTCGGTTGAGACTGATGAAAATATGGAAGAATCTGCTGATCTATTCCAATGTAAAATATGTAGGAGAAAGCTATTgaagaaaaacttaaataagCATATGGAGTTACATAAACGCAAAGAAAGTCGAGAAAAGGATGAAACCAGAAAGTTTTTGTGTGCCTTCTGTCCACGCGAATTTAAAAACGCCAAATCACTACATCAACATGAAAAAATCCATCAAGGTGAACGATTGGATATCGTATATGGTTGTTCTGATTGTGATCGTCAATATGCTTCGCAATATTTATTGGATACACATCGTAAACATGCACATAAAGAACGTGATAACGTTTGTAATATATGTGGTAATGCCTTTAAGATGAAAAATCAATTAATGAATCATATGAAACTGCATTTGGAAAAGAATATACCGTGTCCACATTGTGATAAGAAATATGCGCGACACTTTGACTTAAATGTGCATCTAAGATCTCATACGGGTGAACTACCGTACGCGTGTCATTTGTGTGAAAAGCGTTTTGCCATTAAGGTGCGGCTCACCTATCACTTGCAGAAACACTATGGCATTAAACATTATTGTAAGGAATGTGGTGCTGAGTTCAAttccaaacaaaaattaaaagcacaTTCATTTAAACATACTGGCATGCCATATCGTTGTGAACTGTGTGATGATCATGGATTTGCTACCCGCAATACttttaagCGTCACCTGGATCGGGTGCACCATGCCACCATATCCGATGAAGCTCTGAATGAAATGTTTCAACAGAATACGGGAAAAACTGTTAAAATCCGACAAATCAATCATCAGAGTCTTGTACAAACTACCAGTGAAGATGACAATGAAAACATCCAAGAAGAAATTGAAGTTTtgggaaaataa
- Protein Sequence
- MKRCRCCLATNADMYVDIFEQHKSGATYAENIRYLAEVQVEHDDGLPQQICSNCCNEFHQIYEFGINVRLSDEKLRQEMMASNKNRTEEEDEVHMENVQVLENEYFSPIDENGIQVCVIEEILEQEAEREDVIVEEIHEVEELNMMEELLDVGKEPKENLLASLAQVASTQENVNITISNPNASNEVSHFPEDELDEDYLIKFNENEMNPYKPPKWKCGECQLILRGDVSYEGHMNMHKQLRPHQCPDCQTKFRCRTALKRHKELRHSKTLSKEDIKITYTCRDCNNSFLSSPVFKLHQIIVHNQGQKCPFACDLVKGRDNVKEHLEQMHDEQFVTCAEVFLANGTLPIYQCFKCSETYEKLDLLENHTKDCQSGNEQQLQEDILSVETDENMEESADLFQCKICRRKLLKKNLNKHMELHKRKESREKDETRKFLCAFCPREFKNAKSLHQHEKIHQGERLDIVYGCSDCDRQYASQYLLDTHRKHAHKERDNVCNICGNAFKMKNQLMNHMKLHLEKNIPCPHCDKKYARHFDLNVHLRSHTGELPYACHLCEKRFAIKVRLTYHLQKHYGIKHYCKECGAEFNSKQKLKAHSFKHTGMPYRCELCDDHGFATRNTFKRHLDRVHHATISDEALNEMFQQNTGKTVKIRQINHQSLVQTTSEDDNENIQEEIEVLGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01314840;
- 90% Identity
- iTF_01313260;
- 80% Identity
- -