Sper009797.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sarcophaga peregrina
Gene Symbol
-
Assembly
GCA_014635995.1
Location
CM025790.1:102946266-102950635[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 7.5e-05 0.006 17.6 5.5 1 23 171 193 171 193 0.98
2 15 0.097 7.7 7.8 2.8 1 21 199 219 199 220 0.94
3 15 0.043 3.4 8.9 6.5 1 21 285 305 285 306 0.95
4 15 0.00063 0.05 14.7 6.6 2 23 317 339 316 339 0.94
5 15 3.1e-05 0.0024 18.8 1.2 1 23 423 445 423 445 0.96
6 15 0.0071 0.57 11.4 3.4 1 23 451 473 451 474 0.95
7 15 0.0083 0.66 11.2 0.3 1 23 495 518 495 518 0.95
8 15 1.1e-05 0.00084 20.3 2.6 1 23 524 546 524 546 0.98
9 15 2.1e-06 0.00017 22.5 2.4 1 23 552 574 552 574 0.99
10 15 1.2e-07 9.8e-06 26.4 1.8 1 23 580 602 580 602 0.96
11 15 0.008 0.64 11.2 4.1 1 23 608 630 608 630 0.97
12 15 0.00095 0.076 14.1 2.2 1 23 636 658 636 658 0.96
13 15 6.4e-07 5.1e-05 24.1 0.4 1 23 664 686 664 686 0.99
14 15 4.4e-07 3.5e-05 24.6 1.7 1 23 692 714 692 714 0.99
15 15 0.0073 0.58 11.4 0.1 1 19 720 738 720 739 0.97

Sequence Information

Coding Sequence
ATGTTAACCATTGAATTATATGGTCGGGTGTgtcgtgtgtgtatgtgtaaagcGAATAATTTGCATGATTTGAATGAGACCACCGAAGAGTGTCTCACCATGAATGAAAtgttgacaaaaactgtttccgGCATATATGCCAACATCGAATTTCCAGTGCCTCATGAAATTTGTGACTTATGCGTGGAAAATTTACAAATCTCATACAGATTCCAACAACTATGCATGAATAGCAATGAACAAATGCAGAAAATATGGGAACAGTCACAGAAGGCTGAAGTGAAACAGCAGCCACTGCAGGGTGGTTTGGAAAATGAAGATGAACCGGATCCCATTAAGTtagaatatgatgatgatgaacccAGATTGGATAATGTAGGACTACTGGAGGAATTTGAGAATATAGAAAATGGCAATAAGTCGGACAATGATACCGGGGATGATGAAATGCCCGATAAAGATGAACTGGACCACAGTGAAACCTCAGTAAAGTCATCTTCAAATGAACAATATTCTTGTGTTGAATGTAATGaaacatttacaaaacattCTCAATTAAAGCGTCACTGGCACACACACGTATCTACACATCCCTTCGAATGTCAGATATGTAGCCAacgttttaaaatcaaaagtcGCATGCATAAGCACACGAAAAGCTGCAAAAAAGATAAGAGAAAAGTGGCCACTAAAAGTAAAAGCGATGTTAGTGATGACAACGATGAAGATGAGGATGAGGATGTTcctttaattgctttaaaacgAAACGATAGTGAAAATGAAAGTGatgtttctaaagaaaatgataaaaagagaagaaaatttataaaaccagtTGACAAAAAGACACCTTATTATTGTTCCAAATGCAAAAGTTACTTTAAGTATAGCTATCAGCTTACAAAACATCAATGCAGTGATAAAGACGATAATGATGCTGCtttaaagaaatgtaaaatttgcCATAAGACTTTCAACTCAGAGCATATGTTACAGAGACATAAAAATGCCAAGCATAAGGATGTTAAAGAcacaacaaaatcaaacaaagtTAACGCAAAAAAAGCtactaaaaataaatctaataaaGAAAGCGATGGCAGTGATTACAAACCTGACGATCCGAATGATGAAGAAATGGACTTGGATAATGACAATGATAACGATGGTAATTGGAATGATAACAATGAGTCATCTGATGATAGTGATTCCGattataaagagaaaaagaaaaccattacGAAACCACAAGCTTCTAATAATCCATATCTCTGTAATGAATGCGATGCTTCATACAGATTTGAGAAACAACTCGAAAGGCATATGAAAAAACATACAGAAGCTTATCGTTTTGTGTGCGTTTTATGTTGGGATCGTTTTAAATATCCACATATGTTGCAAAAGCATATGGAGAAACATCATCCAGAAGAAAATCCCGCTCCTAAAGCGGCAGAAACGAAAGCAGAAAACGTAGAAAAGACCCATATTTGTAGTTATTGCCCTTCGGCCTATTCAAATGTCGGGGGTTTGGCTCAACATATGAGCAAAAAACATCCAGAACTTAAACCCTTCAAATGTGATAAGTGTGATAAAACATTCGTGGTTGAGGAACATTTAAAGATACATACAAACCGTCATATgggtattaaaaactttaaatgtgaTTTATGCGATAAATctttcTCATTCAAGTTTGCCATGAAACAGCATATGCGTATACATACGGGAGATTTGAATTATTTGTGTACTTTGTGCGGCAAAAAATTCTATAGGCCTAGTAATTTGCGTCAGCACATGCAGCGTCATGGCGATGATAAACCCTATACATGTCCACACTGCCCTAAACGCTTTAAATGTCCTTCAGATCGTTACATACATTTGATGTCTCATCAAGAGGGTAAAAATCATGTGTGCCAAACTTGTGGGGCACGCTTTTCCAGAGTGGATACATTACATCAACATCAAATATTACATACAGGAGAAAAACGTTACAAATGTGACCAGTGTCCAATGGCatttcctcgtttaatgaatttaaatcgtCATTTACGTACACATACAGGTGAGAAACCATACAAGTGTAAATTTTGTGATAAGGCTTATGCACAAAGTAATGATTTGAATAAACATTTACGCACCCATGTGGGTGAGAACACTTATATGTGTAAACAGTGTCCAGCAGCTTATAAATACCAAGCGGAATTGAGAAACCATGAATGGGAACATTATCGCCTAGAAAAGGAGGCCGAACAGAAAGCTAAAGATGAAGCCACggtattaaaaatgaaagaagaacaGACTGTAATGGAAGTAAATGtatag
Protein Sequence
MLTIELYGRVCRVCMCKANNLHDLNETTEECLTMNEMLTKTVSGIYANIEFPVPHEICDLCVENLQISYRFQQLCMNSNEQMQKIWEQSQKAEVKQQPLQGGLENEDEPDPIKLEYDDDEPRLDNVGLLEEFENIENGNKSDNDTGDDEMPDKDELDHSETSVKSSSNEQYSCVECNETFTKHSQLKRHWHTHVSTHPFECQICSQRFKIKSRMHKHTKSCKKDKRKVATKSKSDVSDDNDEDEDEDVPLIALKRNDSENESDVSKENDKKRRKFIKPVDKKTPYYCSKCKSYFKYSYQLTKHQCSDKDDNDAALKKCKICHKTFNSEHMLQRHKNAKHKDVKDTTKSNKVNAKKATKNKSNKESDGSDYKPDDPNDEEMDLDNDNDNDGNWNDNNESSDDSDSDYKEKKKTITKPQASNNPYLCNECDASYRFEKQLERHMKKHTEAYRFVCVLCWDRFKYPHMLQKHMEKHHPEENPAPKAAETKAENVEKTHICSYCPSAYSNVGGLAQHMSKKHPELKPFKCDKCDKTFVVEEHLKIHTNRHMGIKNFKCDLCDKSFSFKFAMKQHMRIHTGDLNYLCTLCGKKFYRPSNLRQHMQRHGDDKPYTCPHCPKRFKCPSDRYIHLMSHQEGKNHVCQTCGARFSRVDTLHQHQILHTGEKRYKCDQCPMAFPRLMNLNRHLRTHTGEKPYKCKFCDKAYAQSNDLNKHLRTHVGENTYMCKQCPAAYKYQAELRNHEWEHYRLEKEAEQKAKDEATVLKMKEEQTVMEVNV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01315682; iTF_01314006; iTF_01313146;
90% Identity
iTF_01313146;
80% Identity
-