Sbul014455.1
Basic Information
- Insect
- Sarcophaga bullata
- Gene Symbol
- -
- Assembly
- GCA_005959815.1
- Location
- QOCX01000256.1:144732-147659[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0001 0.0056 16.8 5.8 1 23 171 193 171 193 0.98 2 15 0.00059 0.033 14.4 1.2 1 21 199 219 199 220 0.95 3 15 0.034 1.9 8.9 5.7 1 21 283 303 283 304 0.95 4 15 0.00032 0.018 15.3 7.1 2 23 315 337 314 337 0.97 5 15 2.3e-05 0.0013 18.8 1.2 1 23 421 443 421 443 0.96 6 15 0.0054 0.3 11.4 3.4 1 23 449 471 449 472 0.95 7 15 0.0037 0.2 11.9 0.3 1 23 493 516 493 516 0.96 8 15 8e-06 0.00044 20.3 2.6 1 23 522 544 522 544 0.98 9 15 0.75 42 4.6 0.6 9 23 546 560 545 560 0.93 10 15 9.3e-08 5.2e-06 26.4 1.8 1 23 566 588 566 588 0.96 11 15 0.006 0.34 11.2 4.1 1 23 594 616 594 616 0.97 12 15 0.00072 0.04 14.1 2.2 1 23 622 644 622 644 0.96 13 15 4.8e-07 2.7e-05 24.1 0.4 1 23 650 672 650 672 0.99 14 15 3.3e-07 1.8e-05 24.7 1.7 1 23 678 700 678 700 0.99 15 15 0.0048 0.27 11.5 0.1 1 19 706 724 706 725 0.97
Sequence Information
- Coding Sequence
- ATGTTAACCCTCGAATTATATGGTCGGGTGTgtcgtgtgtgtatgtgtaaagcGAATAATTTGCATGATTTGAATGAGACCACCGAAGAGTGTCTCACAATGAATGAAAtgttgacaaaaactgtttccGGCATATATGCCAACATCGAATTTCCAGTGCCTCATGAAATTTGTGACTTATGCGTGGAAAATTTACAAATCTCATATAGATTCCAGCAACTATGCATGAATAGCAATGAACAAATGCAGAAAATATGGGAACAGTCACAGAAGGCTGAAGTTAAACAGCAGCCACTGGAGGGTGGTTTGGAAAATGAAGATGAACCGGATCCCATCAAATtagaatatgatgatgatgaaccaAGATTGGATAATACAGAAGTACTGGAGgcatttgaaaatatagaaaatggcAATAAGTCCGACAATGATACCGGCGATGATGAAATGCCCGATAAAGATGAACTGGAGGACAGTGATACGTCAGTGAAATCATCTTTAAATGAACAATATTCTTGTGTCGAATGTAAGGAATCATTTACAAAACATTCTCAATTAAAGCGTCACTGGCACACACACGTAGCTACACATCCCTTCGAATGTCAGATATGTAGCCAACGTTTTAAAGTCAAAAGTCTCATGCAAAAACACACGAAAAGCTGTAAAAGAGATAAGAGAAAAGTGACCACTAAATGTAAAAGCGATGCTAGTGATGACAACGATGAGGATGAGGATGTTcctttaattactttaaaaagaaacgATAGCGAAAATGAAAGTGatgtttctaaagaaaatgataaaaagagaagaaagttGATGAAACCAGTTGACAAAAAGACACCCTATTATTGTTCCAAatgcaaaagttattttaagTATAACTATCAGCTTATAAAACATCAATGCAGTGATAAAGACGATAATGATGCCGCttcaaagaaatgtaaaatttgccataaaacttTCAACTCAGATCATATGTTGAAGAAACATATAAATTCTAAGCATAAGGATGTGAAAGCCACAACAAAATCATACAAAGTTAACACAAAAAAAGCTACTAAAAGTAAATCTAATAAAGAAAGCGATGACAGTGATTATAAACCTGACGACCAGAATGATGAAGAAATTGATTTGGATAATGACAATGATAACGATGGTAATTGGAATGATAACAACGAGTCGTCTGATAATAGTGATTCTgactataaagaaaaaaagaaaaccatctCAAAACCACAAGGATCTAATAACCCATATCTCTGCAATGAATGCGATGCTTCATATAGATTTGAAAAACAACTCGAAAGGCACATGAAAAAACATACAGAAGCTTATCGTTTTGTATGCGTTTTATGTTGGGATCGTTTTAAATATCCACATATGCTGCAAAAGCATATGGAGAAACATCATCCAGAAGAAAATCCCACTCCTAAAGCAGCGGAACCCAAACCAGAAAATGTAGAAAAGACTCATGTATGTAGTTATTGTCCTTCGGCGTACTCAAATGTTGGCGGTTTGGCTCAACATATGAGCAAAAAACATCCTGAACTTAAACCATTCAAATGTGATAAGTGTGATAAAACATTCGTGGTTGaggaacatttaaaaatacacacaaatcgTCATATggctttCTCATTCAAGTTTGCCATGAAACAGCATATGCGTATACATACGGgagatttgaattatttgtgcACTTTGTGCGGCAAAAAATTCTATAGGCCTAGTAATTTGCGCCAGCACATGCAGCGCCATGGCGATGATAAACCCTATACATGTCCACACTGCCCTAAACGCTTTAAATGTCCTTCAGATCGTTACATACATTTGATGTCTCATCAAGAGGGTAAAAATCATGTGTGCCAAACTTGTGGCGCACGCTTTTCCAGAGTGGATACATTACATCAACATCAAATATTGCATACAGGGGAAAAACGTTACAAATGTGACCAGTGTCCAATGGCaTTTCCTcgattaatgaatttaaatcgtCATTTACGCACACATACAGGAGAGAAACCATACAAGTGTAAATTTTGTGATAAGGCTTATGCACAAAGTAATGATTTGAATAAACATTTACGCACCCATGTGGGTGAGAACACTTATATGTGTAAACAGTGTCCAGCAGCCTATAAATATCAAGCGGACTTGAGAAACCATGAATGGGAACATTATCGCCTAGAAAAAGAGGCCGAACAGAAAGCTAAAGATGAAGCCAcggtattaaaaatgaaagaagaacaGACTGTAATGGAAttggtgttttgtttacaagcattttattataataatagataa
- Protein Sequence
- MLTLELYGRVCRVCMCKANNLHDLNETTEECLTMNEMLTKTVSGIYANIEFPVPHEICDLCVENLQISYRFQQLCMNSNEQMQKIWEQSQKAEVKQQPLEGGLENEDEPDPIKLEYDDDEPRLDNTEVLEAFENIENGNKSDNDTGDDEMPDKDELEDSDTSVKSSLNEQYSCVECKESFTKHSQLKRHWHTHVATHPFECQICSQRFKVKSLMQKHTKSCKRDKRKVTTKCKSDASDDNDEDEDVPLITLKRNDSENESDVSKENDKKRRKLMKPVDKKTPYYCSKCKSYFKYNYQLIKHQCSDKDDNDAASKKCKICHKTFNSDHMLKKHINSKHKDVKATTKSYKVNTKKATKSKSNKESDDSDYKPDDQNDEEIDLDNDNDNDGNWNDNNESSDNSDSDYKEKKKTISKPQGSNNPYLCNECDASYRFEKQLERHMKKHTEAYRFVCVLCWDRFKYPHMLQKHMEKHHPEENPTPKAAEPKPENVEKTHVCSYCPSAYSNVGGLAQHMSKKHPELKPFKCDKCDKTFVVEEHLKIHTNRHMAFSFKFAMKQHMRIHTGDLNYLCTLCGKKFYRPSNLRQHMQRHGDDKPYTCPHCPKRFKCPSDRYIHLMSHQEGKNHVCQTCGARFSRVDTLHQHQILHTGEKRYKCDQCPMAFPRLMNLNRHLRTHTGEKPYKCKFCDKAYAQSNDLNKHLRTHVGENTYMCKQCPAAYKYQADLRNHEWEHYRLEKEAEQKAKDEATVLKMKEEQTVMELVFCLQAFYYNNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01314835;
- 90% Identity
- iTF_01314835; iTF_01314006; iTF_01315682;
- 80% Identity
- -