Basic Information

Insect: Sarcophaga carnaria
Gene Symbol: -
Assembly: GCA_958299815.1
Location: OY283150.1:117980086-117983748[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.1 11 7.8 0.5 5 23 210 229 209 229 0.93

2 16 0.095 10 7.9 5.0 1 23 252 275 252 275 0.93

3 16 0.2 21 6.8 0.6 2 23 297 319 296 319 0.96

4 16 1.1 1.1e+02 4.5 4.1 2 23 327 349 326 349 0.95

5 16 0.00013 0.014 16.9 1.0 2 23 458 480 457 480 0.97

6 16 0.2 21 6.8 0.6 2 23 503 525 502 525 0.96

7 16 1.2 1.3e+02 4.4 4.1 2 23 533 555 532 555 0.94

8 16 3.5e-05 0.0037 18.7 0.6 2 23 664 686 663 686 0.97

9 16 0.2 21 6.8 0.6 2 23 709 731 708 731 0.96

10 16 0.00061 0.064 14.8 2.1 2 23 865 887 865 887 0.97

11 16 1.1e-05 0.0012 20.2 2.2 3 23 896 917 895 917 0.97

12 16 1.2 1.2e+02 4.5 3.0 1 23 939 961 939 962 0.95

13 16 4.2e-05 0.0044 18.4 1.1 1 23 968 990 968 990 0.96

14 16 0.0012 0.12 13.9 5.2 1 23 996 1018 996 1018 0.99

15 16 1.4e-08 1.4e-06 29.4 2.4 1 23 1024 1046 1024 1046 0.99

16 16 0.00016 0.017 16.6 0.5 2 21 1053 1072 1052 1076 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.1	11	7.8	0.5	5	23	210	229	209	229	0.93
2	16	0.095	10	7.9	5.0	1	23	252	275	252	275	0.93
3	16	0.2	21	6.8	0.6	2	23	297	319	296	319	0.96
4	16	1.1	1.1e+02	4.5	4.1	2	23	327	349	326	349	0.95
5	16	0.00013	0.014	16.9	1.0	2	23	458	480	457	480	0.97
6	16	0.2	21	6.8	0.6	2	23	503	525	502	525	0.96
7	16	1.2	1.3e+02	4.4	4.1	2	23	533	555	532	555	0.94
8	16	3.5e-05	0.0037	18.7	0.6	2	23	664	686	663	686	0.97
9	16	0.2	21	6.8	0.6	2	23	709	731	708	731	0.96
10	16	0.00061	0.064	14.8	2.1	2	23	865	887	865	887	0.97
11	16	1.1e-05	0.0012	20.2	2.2	3	23	896	917	895	917	0.97
12	16	1.2	1.2e+02	4.5	3.0	1	23	939	961	939	962	0.95
13	16	4.2e-05	0.0044	18.4	1.1	1	23	968	990	968	990	0.96
14	16	0.0012	0.12	13.9	5.2	1	23	996	1018	996	1018	0.99
15	16	1.4e-08	1.4e-06	29.4	2.4	1	23	1024	1046	1024	1046	0.99
16	16	0.00016	0.017	16.6	0.5	2	21	1053	1072	1052	1076	0.89

Sequence Information

Coding Sequence: ATGGATGAGAAGAGAATACAAAAGTGCAGGACATGTCTTAAGGAAAGTACGAAAACAATTCCTCTAACAAAACCAGTGCGGGGATGCACAACAAATGCGACATACGGGCAATTCCTAAAGGAATATGCACAAATTGAGtatAATGCCGATTATGAATACCACATGCctcaatatttgtgttttttatgctGTCGCCAGTTAAAAAATATCTATGTTTTCATACGTCAAGCCCAGAATTGTAACCTAAAGCTTATTAATGTAATAACTAAACAAATTGATTGCCTGCGGGAACAGGCAATAGATTTACCTCAAATGCAGGAACAAacatcaatttctattaaaaaggaaaatataaacaatattgcTGTCCTAGAAGATCGAGATTATCAAGATTTTATTGCTACAGATGAAGAAAATTCGAAAGCCAATATAACATTAATAAGAGATCTAATTACCGAGAGAGTAGAACAGGCAAAACATGATATTGAAGATAATTTGGAAGAGGATAATAACAACTTTAATAttgaaacaaatcaaaatattacaGTATCGACTAGTACAGAAGTATCCACgatattgaataaatttgacATTCCGCAAAGTACTGAATCTCTTCTGGATGAAGTgcaatgtaataaattaataactaaGCATGACAATTTAATAAATCACATGCGCATTTATCATGACGTTACTAACATAGCACCATCTAAACTTTCACAAAGACTAAATCCATCGTTAAAAAACCAAACATTTGCATGCAAAAAATGTCCCTGTAAATACAgtaataaatacaagtatttgaaTCATGTTAAAGATAAACACGGCAGCAAAGAAGTTACAAATGCTATGGGTAACAACATAGAAAAGCCAAAGAATAAAGTTATTAAATGTCAGTCATGTGATTATACAGCGAAAAGCTATGCAGCTTTAAACTATCACAATCGTTCTAAACATGGCACTGAGTCTGATAAATTAAAGTGCAAATTTTGTTCATACACTAGTTTTAAGAAATGCAACCTATTGGTACATGTTAAAAATGTACACAAGGAACTTATAAAAACTCTAAAGGCTGATACGAAAAGCAAAACGGATGAAAgCATTTCATCAAGTAATAATCTAACTAATGATAATTGCACATCAAGCGATTTTTTAACAATACCCTTAGATGAAGAGAATTCTTTAAATCATGTAGAATACTCTAGCGAAGATGAGATACCACTGGCACATACGATGACCCAATCAAGTTCAAAACATTCATCAGAAGTagaacaagaaaaagaagaattcaGTGATGAAGAtttcataagaaatattttaaatattaaaaaaagaccGCGTAAAAATTTGTCAACCAAATCTTTAGCCAAACGTTGTAACGAATGCGGTAATATATACAAAAACTACAAGTCATTACGAGCTCATCAACGCAGCGTACACATTAGCAGCAAAGAAGTTACAAATGCTATGGATAACAACATAGAAAAGCCAAAGAATAAAGTTATTAAATGCCAGTCCTGTGATTATACAGCGAAAAGCTATGCAGCTTTAAACTATCACAATCGTTCTAAACATGGTACTGAGTCTGATAAATTAAAGTGCAAATTTTGTTCATACACCAGTTTTAAGAAATGCAACCTATTGGTACATGTTAAATATGTACACGAGGAACTTATAAAAACTCTTAAGGCTGATACGAAAAGCAAAACAGATGAAAGCATTTCATCAAGTAATAATCTAAATAGTGATATTTGCACATCAAGCGATTTTTTAACAACACCCTTAGATGGAGAGAAGTCTTTAAATCATGTAGAATACTCTAGCGAAGATGAGATACCACAGGCACATACGATGACCCAATCAAGTTCAAAACATTCATCAGAAGTagaacaagaaaaagaagagtTCAGTGATGAAGAtttcataagaaatattttaaatattaaaaaaagaccGCGTAAAAATTTGTCAACCAAATCTGTAGCCAAACGTTGTAATGAATGCGGTATTATATACAAAAACTACAAGTCATTACGAGCTCATCAACGCAGCGTACACATTAGCAGCAAAGAAGTTACAAATGCTATGGATAACAACATAGAAAAGCCAAAGAATAAAGTTATTAAATGCCAGTCATGTGATTATACAGCGAAAAGCTATGCAGCTTTAAACTATCACAATCGTTCTAAACATGGTACTGAGTCTGATAAATTAAAGTGCAAATTTTGTTCATACACTAGTCTTAAGAAATGCAACCTATTGGTACATGTTAAAAATGTACACAAGGAACTTATAAAAACTCTTAAGGCTGATACGAAAAGCAAAACGGATGAAAgCATTTCATCAAATAATAATTGCACATCAAGCGGTTTTTTAACCATACCCTTAGATGAAGAGAATTCTTTAAATCATGTAGAATACTCTAGCGAAGATGACATTCCACTGGCACATACGATGACCCAATCAAGTTCAAAATATTCGTCAGAAGTagaacaagaaaaagaagaattcaGTGATGAAGAtttcataagaaatattttaaatattaaaaaaagatcgCGTAAAATTTTATCAACCAAATCTTTAGCCAGACGTTGTAACGAATGCGGTAATATATACAAGAACTACAAGTCATTATGTGCCCATCAACGCAGCGTGCACATTAGCGAAGATAAGTTTAGCTTATGCCCGCATTGTGGTAAAAAGTACAAACGGAAAACTGATCTGAGAATTCATATCGAAAAGACACATGCTGCCACAAAAGATGCAGAATCTGCTAAGAAACCAACAATAcctaaaacaagagaaaaacgtTTTATGTGTACAGAATGTTCGTACGTGTGTGCGACAAtaactattttaaatattcacagAAATCGCCATCATACTGGTGAAAAACCCCATAAGTGTGATATATGTAATAAATCATTTATAGTGCCATATGATTTAAGGATTCATCGTTATTTGCATACCGGCGAAAAACCTTACAAATGTCCCGTGTGTTGTAAAGGTTTCCGTGATAATTCCCACATGCTTAAGCACAAACGCATACACAGCAACGAAAGACCATACAAATGCAATGACTGCGGCAAAAGTTTTACACAATCCTATAATTTGTCGGTACATAAGAGAACACACCTTAAAGAGAAAAAGTTAAATTGTTCAATATGCgataaattctttgaaaataaatcaatgcTGAATATACATCGCATAAATGAAAATCACCATGATGAAGTTCTATAG
Protein Sequence: MDEKRIQKCRTCLKESTKTIPLTKPVRGCTTNATYGQFLKEYAQIEYNADYEYHMPQYLCFLCCRQLKNIYVFIRQAQNCNLKLINVITKQIDCLREQAIDLPQMQEQTSISIKKENINNIAVLEDRDYQDFIATDEENSKANITLIRDLITERVEQAKHDIEDNLEEDNNNFNIETNQNITVSTSTEVSTILNKFDIPQSTESLLDEVQCNKLITKHDNLINHMRIYHDVTNIAPSKLSQRLNPSLKNQTFACKKCPCKYSNKYKYLNHVKDKHGSKEVTNAMGNNIEKPKNKVIKCQSCDYTAKSYAALNYHNRSKHGTESDKLKCKFCSYTSFKKCNLLVHVKNVHKELIKTLKADTKSKTDESISSSNNLTNDNCTSSDFLTIPLDEENSLNHVEYSSEDEIPLAHTMTQSSSKHSSEVEQEKEEFSDEDFIRNILNIKKRPRKNLSTKSLAKRCNECGNIYKNYKSLRAHQRSVHISSKEVTNAMDNNIEKPKNKVIKCQSCDYTAKSYAALNYHNRSKHGTESDKLKCKFCSYTSFKKCNLLVHVKYVHEELIKTLKADTKSKTDESISSSNNLNSDICTSSDFLTTPLDGEKSLNHVEYSSEDEIPQAHTMTQSSSKHSSEVEQEKEEFSDEDFIRNILNIKKRPRKNLSTKSVAKRCNECGIIYKNYKSLRAHQRSVHISSKEVTNAMDNNIEKPKNKVIKCQSCDYTAKSYAALNYHNRSKHGTESDKLKCKFCSYTSLKKCNLLVHVKNVHKELIKTLKADTKSKTDESISSNNNCTSSGFLTIPLDEENSLNHVEYSSEDDIPLAHTMTQSSSKYSSEVEQEKEEFSDEDFIRNILNIKKRSRKILSTKSLARRCNECGNIYKNYKSLCAHQRSVHISEDKFSLCPHCGKKYKRKTDLRIHIEKTHAATKDAESAKKPTIPKTREKRFMCTECSYVCATITILNIHRNRHHTGEKPHKCDICNKSFIVPYDLRIHRYLHTGEKPYKCPVCCKGFRDNSHMLKHKRIHSNERPYKCNDCGKSFTQSYNLSVHKRTHLKEKKLNCSICDKFFENKSMLNIHRINENHHDEVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01315744;
90% Identity: iTF_01315744;
80% Identity: -