Scar005473.1
Basic Information
- Insect
- Sarcophaga carnaria
- Gene Symbol
- -
- Assembly
- GCA_958299815.1
- Location
- OY283149.1:66935825-66943562[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0015 0.15 13.6 0.4 1 23 130 153 130 153 0.97 2 13 6.1e-05 0.0064 17.9 1.4 2 23 159 181 158 181 0.97 3 13 5.3e-06 0.00056 21.2 5.6 1 23 190 213 190 213 0.96 4 13 5.2e-06 0.00055 21.3 4.8 2 23 470 491 470 491 0.98 5 13 1.6e-06 0.00017 22.9 3.2 1 23 497 520 497 520 0.96 6 13 0.00041 0.043 15.3 1.8 1 23 525 548 525 548 0.98 7 13 5.5e-05 0.0058 18.1 1.2 1 23 559 581 559 581 0.95 8 13 0.0013 0.13 13.7 2.6 1 23 586 609 586 609 0.95 9 13 3e-05 0.0031 18.9 0.8 1 23 615 637 615 637 0.96 10 13 0.00013 0.014 16.8 1.9 1 23 643 665 643 665 0.98 11 13 6.9e-07 7.2e-05 24.0 1.6 3 23 673 693 672 693 0.99 12 13 4.8e-07 5.1e-05 24.5 0.3 1 23 699 721 699 721 0.99 13 13 0.0016 0.17 13.4 0.2 1 23 726 749 726 749 0.98
Sequence Information
- Coding Sequence
- ATGGAAATCAGCGCGAGattaacaaattataataaaaattctatctGTCGTGTATGCATGCAAAGTAGTGACCACAATTTGTTTCCGatctttaatgaaatattttttggggaCGACACCATCACTGTAGCAGATATTATTACTGAGTGTACTAAATATCCAGTAACTCTAAATGATCAGTTACCTGATCAAATATGTAATCCTTGTATGGAAGCTGCCCGTAATGCTCACCAGTTTAAAAGACAAACGGAAGAGGCTTACTGCCATCTTAAGGAACTGTATGATATAGCATGGGTTCacgaagaagaaaagaacagaAGTTGTGGTGGTTTGAGAGTAGGAGTTATTACCACAGACAAGTATACACAAACAGATAAAAGTACTGTGTTTCAATGTGAGAGCTGCCCGAAAAAGTTTTTCGTAGAAACTGAATTAAGGGAACATCGCGCCACCATCCATGTATATGATGGTAAGAAGTGTCGTGTTTGCGGAGAAACTTTTAATCACTTGGGCCAACTGAAAGTCCATCTATCTACGGAACATCCCAGCGAAGGTATACGTTGtgaatttaaatgcaatataTGTTCAAGAGAATTTACCCGTAAAGATCACTTAAAAAGACATCTAATGCACGTTCACaaaatATCAGAGAAAAGCTTAAATTCTCAAAAGGTCAGTGAATATCATGATAGACCGAAAATAATCAAGCCAACTAAAACTTCAAGTTCAAAAATACCTCTTGAGGAACCTGAAATTGAAAACCCTGCAGTGTTATCggcaaatgtaaataattacaGTAGTCATTGGCCAGATTATCAAGAAGAGGATGAAAACGAACCGATTGATGTTGGTGATCAGAATAAAGAAACTGTAGCCGCTACAAATCCGTTTTCTAGCGATGATGAAGAACATCGTGATTTTAACAATATGAACGAATACGATATGAAGCAATTTGTTGAAACAATAGCTCATCCAGAAATCTCTATTAAAGTTGAGAGGCCAGACTACAGTTACAATTGTTCAAGCGTTAAAAATGAAACCTCAAATAAATCGTCCAATAGTTCATTTGAGGATATCAATTCTAAAGTAACCACTCTAAAACCTGAAAAATCAGAAATTGCTGAGGCCCAAGATAATCAACTACGAGGTGACGATAGCGTCAATCATTCATTTAACGATCATTTTAGTGATAATCAGACTAGCGAGGAAGATACAGATGAAGATTACGATCAGTTTGGCGAGGATGAGGACGAAAGCGGAAGTAAAAGCAatacgaatttaaaaatttcaataaaagaagaaagaaatgtaCAAAGTGAACATCCTTCAAGTTCCACCGCAAGTGGTAAATACACAAAAGTCAAAGCACCAAGACGAAGACATGGCTCATCTAAAACCGAAGATAATCGTTGTAAAGAATGTAATCGTAGCTTTACCCGATACAATCATCTGCTGCGTCATATGTTGACACATAGCGACGAAAAGCCTcatgtttgtaatttttgtggAAAAGGATTTTCACGTTCTGATCATTTACAGAAACATGTACAAAGTATTCACTGTGAGAAGAACTACAAATGTGATCAATGTTCCAGTGCTTATGGCCGCAAGGATCATTTATTACGCCATATAGAAACAAGACATAATAAGGATCCTTCTGTACAAAAGCCCCAATTTGATTGTGATATGTGCgaaaaaaagtttacaacaAAAGCTTACTTGGCAAAGCATAAACTTCTACACACTGACCGTCTTTATGCCTGCAAACATTGTTCAGAAACATTTTCGGAAAAGGAACTAATGAAAgaacatcaaaaagaaaagcaCGCTCAGCCAAGAAACTTCCTATGCAATATTTGCGGTGATTCTTTTCAACGCAATGAATATCTCAAAATACATATGCGTCGTCATACAGGTGAAAAACCTTATAAATGCCGTTTCTGCGAAAAAGGATTTCCCAGAAGCACAGatttaaaaatgcatgaaaGATATCATATTGGTCATAAACCAAATCTATGCAATTTGTGTGGCAAAGGTTTTCATCGTCCCTACAATTTGACAATACATATGAGAACCCATACTGGCGAAAAACCTTACAAATGCAATCAATGTCCACAAGCGTTTGCTCAAAGTAATGACTTGAAAGCTCATATAAGACGCCATACAGGAGAACGATTTCGTTGTGATATGTGCAGTGCAGCTTTTCTTCAGCGTTACGGCTTAAACGCTCACTTAAGAACAGTCCACGGTATTATAGTCACTTCATTCACTGGGCGATTGCGTAAAACAGAACAACCGGTTGAAGATGCCGACAACCTTGACCAACAACCAACCAGCACCACTTTACCAACTCCGCTTTTGTCCTCCGAACATTTACAGAACTCAACAATCGTTGCATCGAACTCGGCACAAGAGCAGTCTCACACTACGCTGCCATCTCATATAGAAAACAATGTCTCACCACCGCCTTTGTATTTAGGTCACCATTTCATAAATACCAATACACCAACGTCTCCAGTTGATATCTCCTCAACCACTTCTGTGTTACCAGTTCCGCTATCACTTCCTTCTACTCAGCAAatgtaa
- Protein Sequence
- MEISARLTNYNKNSICRVCMQSSDHNLFPIFNEIFFGDDTITVADIITECTKYPVTLNDQLPDQICNPCMEAARNAHQFKRQTEEAYCHLKELYDIAWVHEEEKNRSCGGLRVGVITTDKYTQTDKSTVFQCESCPKKFFVETELREHRATIHVYDGKKCRVCGETFNHLGQLKVHLSTEHPSEGIRCEFKCNICSREFTRKDHLKRHLMHVHKISEKSLNSQKVSEYHDRPKIIKPTKTSSSKIPLEEPEIENPAVLSANVNNYSSHWPDYQEEDENEPIDVGDQNKETVAATNPFSSDDEEHRDFNNMNEYDMKQFVETIAHPEISIKVERPDYSYNCSSVKNETSNKSSNSSFEDINSKVTTLKPEKSEIAEAQDNQLRGDDSVNHSFNDHFSDNQTSEEDTDEDYDQFGEDEDESGSKSNTNLKISIKEERNVQSEHPSSSTASGKYTKVKAPRRRHGSSKTEDNRCKECNRSFTRYNHLLRHMLTHSDEKPHVCNFCGKGFSRSDHLQKHVQSIHCEKNYKCDQCSSAYGRKDHLLRHIETRHNKDPSVQKPQFDCDMCEKKFTTKAYLAKHKLLHTDRLYACKHCSETFSEKELMKEHQKEKHAQPRNFLCNICGDSFQRNEYLKIHMRRHTGEKPYKCRFCEKGFPRSTDLKMHERYHIGHKPNLCNLCGKGFHRPYNLTIHMRTHTGEKPYKCNQCPQAFAQSNDLKAHIRRHTGERFRCDMCSAAFLQRYGLNAHLRTVHGIIVTSFTGRLRKTEQPVEDADNLDQQPTSTTLPTPLLSSEHLQNSTIVASNSAQEQSHTTLPSHIENNVSPPPLYLGHHFINTNTPTSPVDISSTTSVLPVPLSLPSTQQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01315681;
- 90% Identity
- iTF_01315681; iTF_01314834; iTF_01313140;
- 80% Identity
- -