Basic Information

Insect: Sarcophaga bullata
Gene Symbol: TSF1
Assembly: GCA_005959815.1
Location: QOCX01000248.1:40662-47886[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0042 0.24 11.7 0.4 1 23 130 153 130 153 0.97

2 16 0.0019 0.1 12.8 1.4 2 23 159 181 158 181 0.97

3 16 4.4e-06 0.00025 21.1 5.6 1 23 190 213 190 213 0.96

4 16 4.3e-06 0.00024 21.1 4.8 2 23 497 518 497 518 0.98

5 16 1.3e-06 7.2e-05 22.8 3.2 1 23 524 547 524 547 0.96

6 16 0.00018 0.0099 16.0 1.5 1 23 552 575 552 575 0.98

7 16 4.5e-05 0.0025 17.9 1.2 1 23 586 608 586 608 0.95

8 16 0.002 0.11 12.7 1.8 1 23 613 636 613 636 0.95

9 16 2.4e-05 0.0014 18.8 0.8 1 23 642 664 642 664 0.96

10 16 0.00011 0.0061 16.7 1.9 1 23 670 692 670 692 0.98

11 16 5.7e-07 3.2e-05 23.9 1.6 3 23 700 720 699 720 0.99

12 16 3.9e-07 2.2e-05 24.4 0.3 1 23 726 748 726 748 0.99

13 16 0.0014 0.076 13.3 0.2 1 23 753 776 753 776 0.98

14 16 7.3e-05 0.0041 17.3 0.9 1 23 852 874 852 874 0.98

15 16 1.6e-06 9.2e-05 22.4 3.9 1 23 880 903 880 903 0.95

16 16 0.0003 0.017 15.3 2.0 3 23 909 929 907 929 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0042	0.24	11.7	0.4	1	23	130	153	130	153	0.97
2	16	0.0019	0.1	12.8	1.4	2	23	159	181	158	181	0.97
3	16	4.4e-06	0.00025	21.1	5.6	1	23	190	213	190	213	0.96
4	16	4.3e-06	0.00024	21.1	4.8	2	23	497	518	497	518	0.98
5	16	1.3e-06	7.2e-05	22.8	3.2	1	23	524	547	524	547	0.96
6	16	0.00018	0.0099	16.0	1.5	1	23	552	575	552	575	0.98
7	16	4.5e-05	0.0025	17.9	1.2	1	23	586	608	586	608	0.95
8	16	0.002	0.11	12.7	1.8	1	23	613	636	613	636	0.95
9	16	2.4e-05	0.0014	18.8	0.8	1	23	642	664	642	664	0.96
10	16	0.00011	0.0061	16.7	1.9	1	23	670	692	670	692	0.98
11	16	5.7e-07	3.2e-05	23.9	1.6	3	23	700	720	699	720	0.99
12	16	3.9e-07	2.2e-05	24.4	0.3	1	23	726	748	726	748	0.99
13	16	0.0014	0.076	13.3	0.2	1	23	753	776	753	776	0.98
14	16	7.3e-05	0.0041	17.3	0.9	1	23	852	874	852	874	0.98
15	16	1.6e-06	9.2e-05	22.4	3.9	1	23	880	903	880	903	0.95
16	16	0.0003	0.017	15.3	2.0	3	23	909	929	907	929	0.98

Sequence Information

Coding Sequence: ATGGAAATCAGCGCgacattaacaaattataataaaaattctatctGTCGTATATGCATGCAAAGTGGTGACCACAATTTGTTTCCGatctttaatgaaatattttttggggacGACACCATTACTGTAGCTGATATTATAACTGAGTGTACTAAATATCCTGTAACTCTAAATGATCAGTTACCTGATCAAATATGTAATCCTTGTATGGAAGCCGCCCGTAATGCTCACCAGTTTAAAAGACAAACGGAAGAGGCTTACTGTCATCTTAAGGAACTATATGATATAACATGGGTTCACGAAGCAGGAAAGAACAGCATTTGTGGTGGTATGAGAGTAGGAGTTACTACCACAGACAAGTATACACAAACAGATAAAAGTACTGTGTTTCAATGTGAGAGCTGCccgaaaaagtttttcatagaaACTGAATTAAGGGAACATCGcgccaccattcatgtatacgATGGTAAGAAGTGTAGAGTATGCGGAGACACATTTAATCACTTGGGCCAGCTGAAAGTCCATCTATCTACGGAACATCCCAGCGAAGGTATACGTTGtgaatttaaatgcaatatatGTTCAAGAGAATTTACCCGTAAAGATCACTTAAAGAGACACCTAATGCACGTTCACaaaatATCAGAGGAAAGCTTAAATTCACAAAAAGTCAGTGAACATCATGATAGATCGAAAATTATCAAGCCAACTAAAACTTTAAGACCAGATATCAAACCCAATGCAATAAAATGTAAGGAATATCGTGAGAGgcagaaactaaaaaagaaaatcacagaTAAAAGTTCAAAAATACCTCTTGAGGAACCTGAAATTGAAAACCCTGCAGTGTTATCggcaaatgtaaataattacagTAGTCATTGGCCAGATTATCAGGAAGAGGATGAAAACGAACCGATTGGAATAGGTAGTCAGAATAAAGAAACTGTAGCCGCTACAAATCCGTTTTCTAGCGATGATGAAGAACATCGTGATTTTAACAATATGAACGAATACGatgttaagaaatttgttgaaacaATAGCTCATCCAGAAATCTCTATTAAAGTTGAGAGGCCAGACTACAGTTACAATTGTTCAAGCGTTAAAAATGAAACCTCAAATAAATCGTCCAATAGTTCATTTGAGGATATCAATTCTAAAGTAACCACTCTAAAACCTGAAAAATCGGAAATTGATGAAGCCCAAGATAACGAAATGCGAGGAGACGACAGCGTCAATAATTCATTTCATGATCATTTTAGTGATAATCAGACTAGCGAGGAGGATACAGATGAAGATTACGATCAGTTTGGTGAGGATGAGGACGAAAGCGGAAGTAAAAGCAgtaagaacttaaaaatttcaataaaagaggaaacaaaTGTACAAAGTGAAAATCCTTCAAGTTCCATCGCAAGTAGTAAATACACAAAAGTCAAAGCACCAAGACGAAGACATGGTTCATCTAAAACCGAAGATAATCGTTGTAAAGAATGTAATCGTAGCTTTACCCGCTACAATCATCTCCTGCGCCATATGTTGACACATAGCGATGAAAAGCCtcatgtttgtaatttttgtggAAAAGGATTTTCACGTTCTGATCATTTACAGAAACATGTACAAAGTATTCACTGTGAGAAGAACTACAAATGTGATCAATGTTCCAGTGCTTATGGCCGCAAGGATCATTTAATACGGCATATAGAAACAAGACATAATAAGGATCCTTCTGTACAAAAGCCCCAATTTGATTGTGATATGTgcgaaaaaaagtttacaacaaaAGCTTACTTGGCAAAGCATAAACTTCTGCATACTGACCGTCTTTATGCCTGTAAACACTGTTCGGAAACATTTCCGGAAAAGGAATTAATGAAAGAacatcaaaaggaaaaacacGCTCAGCCAAGAAACTTCCTATGCAATATTTGCGGTGATTCTTTTCAACGCAATGAATATCTCAAAATACATATGCGTCGTCATACAGGTGAAAAACCTTATAAATGCCGTTTCTGTGAAAAAGGATTTCCCAGAAGCACAGatttaaaaatgcatgaaaGATATCATATTGGTCATAAACCAAATCTGTGCAATTTGTGCGGCAAAGGTTTTCATCGTCCTTACAATTTGACAATACATATGAGAACCCATACTGGCGAAAAACCTTACAAATGCAATCAGTGTCCGCAAGCGTTTGCTCAAAGCAATGACTTGAAAGCTCATATAAGGCGTCATACAGGAGAACGATTTCGTTGTGATATGTGCAGTGCAGCTTTTCTCCAGCGTTATGGCTTAAACGCTCACTTAAGAACAGTTCACGGCATTATAGTCACCTCATTCACTGGGCGATTGCAAGAACCAAGTGACATAATGGATGCTTACAGTTATGATGATATAATGGAACCAGAGGCAATTATTCCTGAGGAAAATGGTGGCGAAGACGAATATATAACAAACAATGATTATGAGTACGAATACTACTTtccaaagaaaagaattttaccaGATGATTATAAATACCAGCGAAATCCAGAAACAAATATGTACTATTGTGTTGAATGCcaacttgaatttaaattacgACGTAATTTAGTTCGTCATATGCTAACACACACAGATGAAAGACCCTTTGCTTgccatttatgttttaaaacttttaagcgCAAAGATAATTTGCAAAAGCATTTACGTGATGTACATCAGAAAAATTTTGGTTGCGATAAGTGTGATAAAAAGTTTGGGTCTATGCAACAATTAATGAGACACAAAAAAACACATCGTActagaagaaataattaa
Protein Sequence: MEISATLTNYNKNSICRICMQSGDHNLFPIFNEIFFGDDTITVADIITECTKYPVTLNDQLPDQICNPCMEAARNAHQFKRQTEEAYCHLKELYDITWVHEAGKNSICGGMRVGVTTTDKYTQTDKSTVFQCESCPKKFFIETELREHRATIHVYDGKKCRVCGDTFNHLGQLKVHLSTEHPSEGIRCEFKCNICSREFTRKDHLKRHLMHVHKISEESLNSQKVSEHHDRSKIIKPTKTLRPDIKPNAIKCKEYRERQKLKKKITDKSSKIPLEEPEIENPAVLSANVNNYSSHWPDYQEEDENEPIGIGSQNKETVAATNPFSSDDEEHRDFNNMNEYDVKKFVETIAHPEISIKVERPDYSYNCSSVKNETSNKSSNSSFEDINSKVTTLKPEKSEIDEAQDNEMRGDDSVNNSFHDHFSDNQTSEEDTDEDYDQFGEDEDESGSKSSKNLKISIKEETNVQSENPSSSIASSKYTKVKAPRRRHGSSKTEDNRCKECNRSFTRYNHLLRHMLTHSDEKPHVCNFCGKGFSRSDHLQKHVQSIHCEKNYKCDQCSSAYGRKDHLIRHIETRHNKDPSVQKPQFDCDMCEKKFTTKAYLAKHKLLHTDRLYACKHCSETFPEKELMKEHQKEKHAQPRNFLCNICGDSFQRNEYLKIHMRRHTGEKPYKCRFCEKGFPRSTDLKMHERYHIGHKPNLCNLCGKGFHRPYNLTIHMRTHTGEKPYKCNQCPQAFAQSNDLKAHIRRHTGERFRCDMCSAAFLQRYGLNAHLRTVHGIIVTSFTGRLQEPSDIMDAYSYDDIMEPEAIIPEENGGEDEYITNNDYEYEYYFPKKRILPDDYKYQRNPETNMYYCVECQLEFKLRRNLVRHMLTHTDERPFACHLCFKTFKRKDNLQKHLRDVHQKNFGCDKCDKKFGSMQQLMRHKKTHRTRRNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01315681;
90% Identity: iTF_01314005;
80% Identity: -