Sbul003737.1
Basic Information
- Insect
- Sarcophaga bullata
- Gene Symbol
- znf711_1
- Assembly
- GCA_005959815.1
- Location
- QOCX01003484.1:11475-16916[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0098 0.55 10.6 1.3 2 23 18 40 17 40 0.95 2 21 5.1e-05 0.0028 17.8 1.3 1 23 47 70 47 70 0.93 3 21 0.0012 0.065 13.5 0.4 1 17 76 92 76 93 0.94 4 21 1.4e-05 0.00077 19.5 3.2 3 23 131 152 130 152 0.91 5 21 0.019 1 9.7 0.5 2 23 161 183 160 183 0.96 6 21 0.0011 0.062 13.5 3.1 1 23 190 213 190 213 0.93 7 21 1.4e-05 0.00081 19.5 0.5 1 23 219 241 219 241 0.98 8 21 8.3e-06 0.00046 20.2 0.8 1 23 247 270 247 270 0.97 9 21 5.4 3e+02 1.9 0.1 8 23 345 360 344 360 0.88 10 21 1.2e-05 0.00065 19.8 3.4 2 23 367 389 364 389 0.91 11 21 0.057 3.2 8.2 0.1 2 23 401 423 400 423 0.95 12 21 0.047 2.6 8.4 2.2 1 22 430 451 430 453 0.89 13 21 4.9e-05 0.0028 17.8 1.5 1 23 459 481 459 481 0.98 14 21 0.2 11 6.5 8.1 2 23 500 522 499 522 0.92 15 21 4.1 2.3e+02 2.3 1.4 2 23 534 555 534 555 0.91 16 21 0.00011 0.0063 16.7 1.1 1 23 562 585 562 585 0.95 17 21 0.018 1 9.7 0.2 1 15 591 605 591 608 0.88 18 21 0.00013 0.0071 16.5 0.1 1 23 636 659 636 659 0.97 19 21 0.019 1 9.7 0.4 2 23 697 719 697 719 0.95 20 21 3.3e-06 0.00019 21.5 0.1 1 23 725 747 725 747 0.98 21 21 0.071 3.9 7.9 5.1 1 23 753 776 753 776 0.91
Sequence Information
- Coding Sequence
- ATGCGTAAGCATGTCGATGCAGAACATTCCCATGTAAAGCCAGAACCTCAGCAATGTAAAATATGCAACACATGGTATCGCAACATGTCTGGCTTGAGGACTCACATGAAATTTATGCATGAAAATATTGGCGGTGAACATCGCTGCAATATATGCAATAAAGTTTCAACCAATGCACGTGCTTTAAGaagacatatttatttaaatcatgaaTGCGAACGGAAATATAAATGTCACATGTGTGAAAAGGCTTTTAAAAGAGAACAAGATCTAAGAcaacaacaacaacaacaacataaaatacaaattgcTAAAAGCCACTTAGGatTACCTTCTGAAGGTAAACTACGAGAACATATGCACAGTCATGACGCAACAAAACGACCAATATGCCATAAATGCGGcaagacatttaaaaataattacaatatgaaaaaacacGAAGAAAACGAACATGCTGAAGTAAAACCGGAGCCACAACAGTGTACCATTTGTAATACATGGTATCGTAATATAGCCGGTTTAAAGACTCACATGAAAAATATGCATTATAATATGGAAACCGAACATCGTTGTAGCATTTGTAATAAAGTCTCAACAACACATCGTGCCTTATTAAGGCACATTTATTTGAATCACAAATGTGAAAAGCGTTTCAAATGCAATATGTGTGAAAAGGCTTTTAAAAGAGGACAAGATTTACGAGAGCATATATCAGTGCATACGGGAGAAGCTTTGTATACGTGTCCGAATTGTCCAATGACATTTTCATCCAGTGCAAATATGTATAAACATCGTCAACGTGTACATAAGGCTGAGTATGCTGCTTATAAACAGCAATGTTTTCCgccaaatattataaaacaggCTAAATCTGGTGCTTTAAATAAAGTACACGATAAACGAGAAGACTATGTTGGacaatcttataaaaatattgcttcgttTTTGCCTAAGTGTAAAGTATCTTCAGAATTACAAGGCAAAACTAATCTAATAAACTTGCAAGCTTTATCAGCCACCCAATTTGGGATAGAaTTTCCATCCAAGCGTAAACTCTCATCTCACCTGACCGTCCATAGTACCGTGTACACATGCATGTGTGACATTTGTGGTAgaacatttaaaagtaaatttacattaaaaaaacatatcgAACTGAAGCATTCAGAAAAACCCCGCCAGGATAAAGATCCCCAAGAATGTCCCATATGTTATAAATTGCTTCGAGGTATTAAAGGCCTTAAGGCTCATATGAAAAATATCCATGAAGCTGGCGAACAGGAACATCGTTGTAAAATTTGTAATCACATATCAACAACCGCCAAAGGTCTAAGAGTTCATGAAATATTCCGTCATGAAAAGGAGAGAAAACATAAATGTTACTTTTGTGAGAAAGCGTTTAAAAGGCCATTGGATTTACGAgAACATATTGCAACACATACGGCTAAACGTTTGAGTGCCCATGAAAATACTCATAATCCGCAGAATATATTAATTTGTGATAAATGcggtaaaacatttaaagacaaGTGTCGTTTAAGATTTCATCATCGACACGATCATTCCAGTGAACCAAAACCCGAAAAAATACCAGAACAATGTCCGTTCTGTAACAATGTATCATCGAAATCAAGTGTACACGAGCATGTACGCAATATGCATACAAATAACGATATTGAACATCGTTGTCCAACATGTGGTTTTGTCTCGACCACAGCTAAGGCATTGAAAAAGCATATACTATATAATCATGATGTTGTGCGACGACACAAATGTAATCTATGTGAGAAGGCCTTTAAAAGGCCACAGGATATAAAAGTTcGAGCATATGGCTACTCATACGGaTTGCCAACCAGCCGTCATTTAGCACAACATCGTTGTCATCCGAATGCTATCAAAGCTTATACATGTGATATATGTGGCGAAACAATTGTTACACTTAAGAATCTAAATGAACATAAATTAACGGTACATGGTACTAAAAACACCAAGGATCCGAAACAATGTAAAATTTGCCATAATTGGTATAAAGATTTGAAATATCATTTACGCAATATGCATAGTGACAATTCGGATAAACGTAACGTATGTGAAATTTGTGGTTTTGTATCCACTACCAGGGTGGCTAAAATGAAACATATACGTTTCAAGcataaatcagaaaataaatacaaatgttcTATGTGCGATAAAGCATTTAAAGTGCCCATGTTATTAAAGGAACACATGGCTATACATACTGGTGTCGATTTGTATTCATGCGCACATTGTCCGATGACTTTTAAAGCCAAGTCCAATATGTATAATCATTGCAAACGTATGCATCCGGAAGAATTTGAAAACAGTGTACAGAAACGTCTACGCATACCCAAAACTTTGTAG
- Protein Sequence
- MRKHVDAEHSHVKPEPQQCKICNTWYRNMSGLRTHMKFMHENIGGEHRCNICNKVSTNARALRRHIYLNHECERKYKCHMCEKAFKREQDLRQQQQQQHKIQIAKSHLGLPSEGKLREHMHSHDATKRPICHKCGKTFKNNYNMKKHEENEHAEVKPEPQQCTICNTWYRNIAGLKTHMKNMHYNMETEHRCSICNKVSTTHRALLRHIYLNHKCEKRFKCNMCEKAFKRGQDLREHISVHTGEALYTCPNCPMTFSSSANMYKHRQRVHKAEYAAYKQQCFPPNIIKQAKSGALNKVHDKREDYVGQSYKNIASFLPKCKVSSELQGKTNLINLQALSATQFGIEFPSKRKLSSHLTVHSTVYTCMCDICGRTFKSKFTLKKHIELKHSEKPRQDKDPQECPICYKLLRGIKGLKAHMKNIHEAGEQEHRCKICNHISTTAKGLRVHEIFRHEKERKHKCYFCEKAFKRPLDLREHIATHTAKRLSAHENTHNPQNILICDKCGKTFKDKCRLRFHHRHDHSSEPKPEKIPEQCPFCNNVSSKSSVHEHVRNMHTNNDIEHRCPTCGFVSTTAKALKKHILYNHDVVRRHKCNLCEKAFKRPQDIKVRAYGYSYGLPTSRHLAQHRCHPNAIKAYTCDICGETIVTLKNLNEHKLTVHGTKNTKDPKQCKICHNWYKDLKYHLRNMHSDNSDKRNVCEICGFVSTTRVAKMKHIRFKHKSENKYKCSMCDKAFKVPMLLKEHMAIHTGVDLYSCAHCPMTFKAKSNMYNHCKRMHPEEFENSVQKRLRIPKTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01313414;
- 90% Identity
- iTF_01313414;
- 80% Identity
- iTF_01313414;