Sbul007106.1
Basic Information
- Insect
- Sarcophaga bullata
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_005959815.1
- Location
- QOCX01017876.1:2297-4217[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-60 1.4e-56 191.8 14.8 125 299 1 167 1 168 0.96 2 2 0.039 3e+02 0.2 4.1 219 245 195 221 170 242 0.47
Sequence Information
- Coding Sequence
- GACAAACTGGAAGATATGGAAGAATCATATGCACAGCTGCAACGCGAATGTAAAGAAAAGTCACGCGATTGTAATGCATTAAAGCGTTCGTTAGATAAGTTAAGTGAAGAGTTAAAACTGGTACAGGGTCAGCTCGATGAGCGTGACACACTGATAACAGAACAGGGTCTAGTTATTGTGGcaattgaaaatgaggatggcacTGATGCCAAACGTGCTCTAGTCAGTGTTGAAAATGCACAACTATTGGGTTCGGTACAAGGATCATTAGatGTTCGACTTAAGAAATTTAgcgaagaaaaacaacaattacaaagtGAAGTGCAACATTTGCAGGAACaattagaaatatataaaagtCAGGGTAAAGGTCGTGGCAAAAATAGTTCTTCAAATGGACCTCTAGGctcagatgatgatgattatgaagCTCAAAgagaagccaataaaatcatttcggattataaatataaattacaaaaagctGAACAGGAAATTGCTAGTCTACAGTCGAGTTTGGCCCGTTCTGAAACACAAGTTATACGTTATAAAAGCACAGCGGAAGCAGCCGAAAAAGCCGAAGCAGAACTTAAAATCGAAAGAAGAAAACTGCAAAGAGAGAATCGCGAAGCAATGGAAAAACTCGAAGAGTTAGAAACATCAAATAATCATCTGTTAAAACGTTTGGACAAATTAAAGAATGCCAAAAGTGCTTTGCTTAAAGATCTCTGA
- Protein Sequence
- DKLEDMEESYAQLQRECKEKSRDCNALKRSLDKLSEELKLVQGQLDERDTLITEQGLVIVAIENEDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLQSEVQHLQEQLEIYKSQGKGRGKNSSSNGPLGSDDDDYEAQREANKIISDYKYKLQKAEQEIASLQSSLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMEKLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00904743;
- 90% Identity
- -
- 80% Identity
- -