Basic Information

Insect: Samia ricini
Gene Symbol: -
Assembly: None
Location: BLXV01000022:1714969-1722653[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.2 81 4.2 7.3 1 23 180 203 180 203 0.92

2 14 0.00071 0.047 14.4 4.5 2 23 209 231 209 231 0.97

3 14 0.00026 0.017 15.7 2.5 3 21 246 264 245 265 0.95

4 14 4.2e-05 0.0028 18.2 2.2 1 23 274 297 274 297 0.98

5 14 2 1.3e+02 3.5 1.9 5 23 307 326 305 326 0.90

6 14 1.7e-06 0.00011 22.6 4.6 2 23 374 396 373 396 0.97

7 14 0.0048 0.31 11.7 0.5 6 23 407 424 405 424 0.92

8 14 0.00069 0.045 14.4 1.5 2 23 432 454 431 454 0.95

9 14 0.00022 0.015 15.9 0.1 6 23 465 483 463 483 0.93

10 14 0.0018 0.12 13.1 1.8 3 23 497 518 495 518 0.92

11 14 0.004 0.26 12.0 2.1 2 21 558 577 557 581 0.89

12 14 0.00064 0.042 14.5 3.8 2 23 623 645 622 646 0.96

13 14 0.00075 0.049 14.3 0.7 6 23 657 675 655 675 0.94

14 14 0.0083 0.54 11.0 3.8 2 23 688 710 687 710 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.2	81	4.2	7.3	1	23	180	203	180	203	0.92
2	14	0.00071	0.047	14.4	4.5	2	23	209	231	209	231	0.97
3	14	0.00026	0.017	15.7	2.5	3	21	246	264	245	265	0.95
4	14	4.2e-05	0.0028	18.2	2.2	1	23	274	297	274	297	0.98
5	14	2	1.3e+02	3.5	1.9	5	23	307	326	305	326	0.90
6	14	1.7e-06	0.00011	22.6	4.6	2	23	374	396	373	396	0.97
7	14	0.0048	0.31	11.7	0.5	6	23	407	424	405	424	0.92
8	14	0.00069	0.045	14.4	1.5	2	23	432	454	431	454	0.95
9	14	0.00022	0.015	15.9	0.1	6	23	465	483	463	483	0.93
10	14	0.0018	0.12	13.1	1.8	3	23	497	518	495	518	0.92
11	14	0.004	0.26	12.0	2.1	2	21	558	577	557	581	0.89
12	14	0.00064	0.042	14.5	3.8	2	23	623	645	622	646	0.96
13	14	0.00075	0.049	14.3	0.7	6	23	657	675	655	675	0.94
14	14	0.0083	0.54	11.0	3.8	2	23	688	710	687	710	0.91

Sequence Information

Coding Sequence: atggatagagaatatatagtactcagttctgaaactttgggtacagcaaacacaaatacacagtggaaacaacagatctttacaccagagctgaaacaagaatttgaaaatgacacagatgatgaaaattcatctgggagtgactatacgttaccacaacatgtcaattactatgacagcaagactcatgtgttagaacaagtgaaggaagaacttcctggggatgaacatcctgaagtagactgtactatcaataccaaaatattacctgaaaataacagtttagtaaatgttaaagataaacaaaaaattgataatgaaaaccttggggggccattagaaattaagcaaaaaaatgagtataatacatatgagcttacaataaaattagaggcggatgaccgggaagtaactatggataatgctgaaaataccgtaccgttgcacagtaaaaatagtttaaatttattagagcacagtaatgaacaaataaaaattgaaataaacacttcagaggataatggaatgaaggagttacataagtgccaatattgtagtgaatgttttaataaacatgatcgtatgcttgcgcatgtcagttactatcacagaatggaatttccgaagtgtgagctatgtggaaaacatttcaagagggtgcaaaatgttaaacatcacattttaaaattgcataaaatcaagatgccaattagagtaattcgaaaaaataaaatatgtacaaactgtaatctcgttttcaaacacaaatcaactttcaaaagacatattaagttttgccgtcccgctaagaaagttacatataaatgtggtacatgtgtgaaatttttcaaaactagaaattctctagtagttcacatgaaacggactcattataatttcgggagaatgtttaagtgttggtgcggggagcagttccatactccaatacacttgagcgagcacaaaagcttacagcatactggtaataggaatagagagaagtacaagtgtaaagttaaacattactccgggactgagttgctgaatctaatacaattaaccaatcatgagatacgccgccatgttcgtctaagtgagagtacatataaaggcaaagttcaatgtgatcattgccatagaactttcacgagcaattcttatttattgaaacatataagaagaattcattacgattacggtaaagtgtttagatgttggtgcgggaaagagtaccgtactccgtaccacttaaaggagcatgagggtatgcataactatgaaaaaaccaaagtccagtgtgacacgtgtaagagattttacaaaaacaattactctttagttaaacataaaataaaaattcacagtgattacggtaaagtctatgattgttggtgcggaaaagaattccgtactccgtcgcagttgacagaccatataatacaagagcatggtagtaaagataatagtacaaataatgacaaagtccattgtgtaaaatgcaacagatttttcaaaaacagaaatggcttactgagacatataataggaagacatcaagattataataacaaagtattcaaaagttcatctgaggaagaaatacatactaaatctgatgataagaaacaacagcacaatagtaaaattacagaaataaataatggtaaacttcactgtgtaaaatgcaagagttttttcaaaaacagagattctctacagcggcatattatgggaactgatcatgattatgatatcaaagtatacaggaattggtgcagttcagaaatccatactccgtcaaagttagccgataataaggatcaacagaaaaatagtataaatgaaatactaaataaagacatagtccaatgtgtaaagtgcaagacttattttaaaaacagaacttacttgtacagacatattaggagagttcaccatgattatggcagcaaagtattctcatgttggtgcgggaaagtgttccgtactccgtacaagttgaccagtcataagagtatgagccatgatggcaaaaatgatggagcactcgctactagagtccaatgcgatgtttgcaagaaattctataaaagtaatcgtttattagaaaggcattgtaaaagaatgcattgtgattacttgttcgaatga
Protein Sequence: MDREYIVLSSETLGTANTNTQWKQQIFTPELKQEFENDTDDENSSGSDYTLPQHVNYYDSKTHVLEQVKEELPGDEHPEVDCTINTKILPENNSLVNVKDKQKIDNENLGGPLEIKQKNEYNTYELTIKLEADDREVTMDNAENTVPLHSKNSLNLLEHSNEQIKIEINTSEDNGMKELHKCQYCSECFNKHDRMLAHVSYYHRMEFPKCELCGKHFKRVQNVKHHILKLHKIKMPIRVIRKNKICTNCNLVFKHKSTFKRHIKFCRPAKKVTYKCGTCVKFFKTRNSLVVHMKRTHYNFGRMFKCWCGEQFHTPIHLSEHKSLQHTGNRNREKYKCKVKHYSGTELLNLIQLTNHEIRRHVRLSESTYKGKVQCDHCHRTFTSNSYLLKHIRRIHYDYGKVFRCWCGKEYRTPYHLKEHEGMHNYEKTKVQCDTCKRFYKNNYSLVKHKIKIHSDYGKVYDCWCGKEFRTPSQLTDHIIQEHGSKDNSTNNDKVHCVKCNRFFKNRNGLLRHIIGRHQDYNNKVFKSSSEEEIHTKSDDKKQQHNSKITEINNGKLHCVKCKSFFKNRDSLQRHIMGTDHDYDIKVYRNWCSSEIHTPSKLADNKDQQKNSINEILNKDIVQCVKCKTYFKNRTYLYRHIRRVHHDYGSKVFSCWCGKVFRTPYKLTSHKSMSHDGKNDGALATRVQCDVCKKFYKSNRLLERHCKRMHCDYLFE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01312430;
90% Identity: -
80% Identity: -