Sric017430.1
Basic Information
- Insect
- Samia ricini
- Gene Symbol
- -
- Assembly
- None
- Location
- BLXV01000022:1726409-1734154[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 4.7 3.1e+02 2.3 0.5 2 19 155 174 154 176 0.90 2 16 0.11 7.2 7.5 4.0 1 23 195 218 195 218 0.92 3 16 3.1e-05 0.002 18.6 0.9 2 23 224 246 224 246 0.97 4 16 0.0026 0.17 12.6 5.3 2 23 260 282 259 282 0.95 5 16 0.00014 0.0095 16.5 2.2 1 23 289 312 289 312 0.98 6 16 2.1 1.4e+02 3.4 1.9 5 23 322 341 320 341 0.90 7 16 3.8e-05 0.0025 18.4 2.2 1 23 350 373 350 374 0.97 8 16 4.9e-07 3.2e-05 24.3 4.8 2 23 405 427 404 427 0.97 9 16 0.005 0.33 11.7 0.5 6 23 438 455 436 455 0.92 10 16 0.0024 0.15 12.7 3.6 2 23 463 485 462 485 0.95 11 16 0.00025 0.017 15.8 0.3 6 23 496 514 494 514 0.93 12 16 0.0095 0.62 10.8 2.2 3 23 528 549 526 549 0.95 13 16 0.0042 0.28 11.9 2.1 2 21 589 608 588 612 0.89 14 16 0.0079 0.52 11.1 6.3 2 23 654 676 653 677 0.96 15 16 0.0054 0.35 11.6 2.0 6 23 688 706 686 706 0.92 16 16 0.0076 0.5 11.1 3.4 2 23 719 741 718 741 0.91
Sequence Information
- Coding Sequence
- atggatagagaatatgtagtacccggaattgaaactttgggtaccgcagacacaaatacacagtggaatcgccaaatctttacaccggagctgaaacaagaatttgataatgacacagatgatgaatattcatctgggagtgtctatatgttaccacaacatttcaattactatgacagtaagactcatgtgttagaacaagtgaaggaagaacttcctggggatgaacatcctgaagtagactgctgtacaaacaataacaaaatattacctgaaaataatagtttagtaaatgttaaagatgaacaaaacattgaaaatgaaagccttgaggcgtcattagatataaagcaagaaaataaggataatatatatgagtttacaataacattagaggcggatgaccgggaagtgattattgataatgctgaaaataccaatatgcattgtgatgtctcagtaacttgtcaaaaatctcaatgcaagttatacagtaaaagtagttccaatttattagagcacagtagtgaacaaataaaaattgaaataaacacttcagaggataatgaaatgaaggattggcataattgccaatattgtagtgaacgtttccataatcgtgatagtatgcttgcgcatgtcagttactatcacagaatgaaatatcccaagtgtgagctatgtggaaaacaattcaaaactgtgcagggtcttaaacgtcacattttaaaattacatagactcaagttgccaatgagagtaactagaaaaaatttgacatgcacatactgtaatttcgctttcaaaaataaattaactttcaaaagccatatgaagttgtgtcatcctgctaaaaaagttacatataaatgtggttcatgtgtgaaatatttcaaaactagatattctctagtcgttcacatgaaacgcactcattataatttcgggagaatgttcaagtgctggtgcggggagcagttccatactccaatacacttgagcgagcacaaaagcttacagcatactggtaataggaatagagagaagtacaagtgtaaagtctgtgatgcaatgtttaaatcaaaatggtatttgacaattcatgtacaaaggagtcatcatgattgtgaaagaaatactgaagaacaatcagccaatcatgagacacggcgccatgatcggctaagtgagagtacatataaaggcaaagttcaatgtgatcattgccatagaactttcacagacaattcatatttaatgaaacatatgagaagaattcattacgattacggtaaagtgtttagatgttggtgcgggaaagagtaccgtactccgtaccacttaaaggagcatgagggtatgcataactatgaaaaaaccaaagtccagtgtgacacgtgtaagagattctacaaaaacaagcattctttagttaaacataaaataaaaatccacagtgattatggtaaagtctatgattgttggtgcgggaaagaattccgtactccgtcgcagttgacagaccatataagtcaacagcatggtagtaaagataatagtacaaataatgacaaagtccattgtgtaaaatgcaacagattattcaaaaacacaaatggcttactgagacatataatgagaagtcatcaagattataataacaaagtattcaaaagtccatttgaggaagaaatgcatactaattcagatgataaggaacaacagcacaatagtcaaattgaagaagtaaataatgttaaactacactgtgtaaaatgcaagagttttttcaaaaacagagattctctacagcggcatattatgggaactgatcatgattatgatatcaaagtatacaggaattggtgcagttcagaaatccatactccgtcaaagttagccgataataaggatcaacagaaaaatagtataaatgaaatacgaaataaagacgtagttcaatgtgtaaagtgcaagacttattttaaaaacagaacttgtttgtacagacatattaggagagttcaccatgattatggtagcaaggtattctcatgttggtgcgggaaagtgttccgtactccgtacaagttatgcagtcataagtttatgagccatgacagtaaaaatgatggagcactcgctctcagagttcaatgcgatgtttgccagaaattttataaaagcaaccgtttattagaaagacattgtaaaaggatgcattgcgattacttgtttgaataa
- Protein Sequence
- MDREYVVPGIETLGTADTNTQWNRQIFTPELKQEFDNDTDDEYSSGSVYMLPQHFNYYDSKTHVLEQVKEELPGDEHPEVDCCTNNNKILPENNSLVNVKDEQNIENESLEASLDIKQENKDNIYEFTITLEADDREVIIDNAENTNMHCDVSVTCQKSQCKLYSKSSSNLLEHSSEQIKIEINTSEDNEMKDWHNCQYCSERFHNRDSMLAHVSYYHRMKYPKCELCGKQFKTVQGLKRHILKLHRLKLPMRVTRKNLTCTYCNFAFKNKLTFKSHMKLCHPAKKVTYKCGSCVKYFKTRYSLVVHMKRTHYNFGRMFKCWCGEQFHTPIHLSEHKSLQHTGNRNREKYKCKVCDAMFKSKWYLTIHVQRSHHDCERNTEEQSANHETRRHDRLSESTYKGKVQCDHCHRTFTDNSYLMKHMRRIHYDYGKVFRCWCGKEYRTPYHLKEHEGMHNYEKTKVQCDTCKRFYKNKHSLVKHKIKIHSDYGKVYDCWCGKEFRTPSQLTDHISQQHGSKDNSTNNDKVHCVKCNRLFKNTNGLLRHIMRSHQDYNNKVFKSPFEEEMHTNSDDKEQQHNSQIEEVNNVKLHCVKCKSFFKNRDSLQRHIMGTDHDYDIKVYRNWCSSEIHTPSKLADNKDQQKNSINEIRNKDVVQCVKCKTYFKNRTCLYRHIRRVHHDYGSKVFSCWCGKVFRTPYKLCSHKFMSHDSKNDGALALRVQCDVCQKFYKSNRLLERHCKRMHCDYLFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01312445;
- 90% Identity
- -
- 80% Identity
- -