Sric017263.1
Basic Information
- Insect
- Samia ricini
- Gene Symbol
- -
- Assembly
- None
- Location
- BLXV01000033:602337-607713[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2.6e-06 0.00017 22.0 4.1 1 23 7 30 7 30 0.95 2 21 0.0011 0.073 13.7 0.3 2 23 36 58 35 58 0.95 3 21 1.6e-05 0.0011 19.5 0.1 2 23 67 89 67 89 0.97 4 21 0.00015 0.0095 16.5 1.9 2 23 98 120 97 120 0.94 5 21 9.4e-05 0.0062 17.1 0.2 2 23 128 150 128 150 0.96 6 21 0.00039 0.025 15.2 1.4 2 23 158 180 157 180 0.96 7 21 5.3e-07 3.5e-05 24.2 1.7 1 23 186 209 186 209 0.98 8 21 0.84 55 4.7 1.0 2 23 218 240 217 240 0.89 9 21 0.036 2.4 9.0 0.2 2 23 262 284 261 284 0.94 10 21 9.8e-06 0.00064 20.2 3.5 1 23 310 333 310 333 0.97 11 21 8.9 5.8e+02 1.5 0.6 2 22 341 361 340 361 0.88 12 21 0.0014 0.092 13.4 0.8 2 23 370 392 370 392 0.97 13 21 0.0038 0.25 12.1 6.1 1 23 415 438 415 438 0.97 14 21 0.00072 0.047 14.3 2.6 2 23 445 467 444 467 0.96 15 21 2.8e-05 0.0019 18.8 2.2 2 23 474 496 473 496 0.94 16 21 0.0066 0.43 11.3 2.2 1 23 502 525 502 525 0.97 17 21 0.17 11 6.9 6.5 2 23 533 555 533 555 0.94 18 21 9.8e-05 0.0064 17.1 0.5 1 23 562 585 562 585 0.96 19 21 0.0011 0.074 13.7 2.1 1 23 592 615 592 615 0.90 20 21 0.034 2.2 9.1 2.8 5 23 632 651 629 651 0.90 21 21 2 1.3e+02 3.5 0.5 1 12 701 712 701 715 0.86
Sequence Information
- Coding Sequence
- atgtatcaatcattagattatgtttgcgactactgtagcagaacgtttacgaggaaatataatctgcagactcacatagagaattgtcacataaactcatcatgctactgcgacatatgcgaacagacgtttggcagtccggccggtttgcagctccatttatcacgcggacacaatcggcattcccaaccgtttccagaatgcgacatttgcggccgtattttcacaaggaaacaaaacatagtgtcacacatgatcaccgtacatttgcaaggcaaactatcgaagatacgttgcaggctgtgttcgaaaacgtttacaaccgacaggaatctcaaaagacacgtcaatcagctccataacacagatgtagaatatccaacgtgcgacgagtgtaataaagtatttgaagggaaacaatccctattggctcatatacagagcatgcattacactgaaagcgggcctaatcagtgtaatttgtgtgaaagagtttatataaacgaccgaaatctccaaaagcacatggaggtgtgtcaccgagagaaagaagaattccgatgcgatctttgccctaaagtgtacacttcgaatcgcagtcttagaaggcatttacgtactacacacgtttcagaagatcgagagcctctgaaatgtgacatatgctataaagtaatattcggtaaggagaatctcgatagtcacgtgcatttctttcatagcgcgcaagaggactgtagtacaaacgacgtgagcgaatacaatgtaaaaactaacgatgttgtctgcgaatcgtgcaacgaaacattcgatgaggaaccgaagttacggcagcatgtgaaaaacaatcattcctttaaaacattttatagatattgcaagaggtcattgttaaaacaaatgtcagaatccaagaagaatgtgtttttctgctgcgaatactgtagctattcgttcacaaacgtctacgagttaaagaatcatatgagagtgaaccatgacaaggagtattcaatgtccacttgcaacgtatgcttcgacagattttacagtagagatacgattttggaacacaagaaaacgtgtctgccgcctgataatgtcaacacttgcaataactgcgataaattatttaccgatatatcaagtttggagtttcacatgaggatattccatccccaagctcaaatagctgattccaatataacctcgacgaatactgaagatgcagatggtggttcatacagatgccgtcattgcgacagagtttactatagcgatagatctctaaagcaccacattaagttaaaacacacgaccgacgaagccatggagtgttgttactgcgggaaaatttgcaataataaatattatttagcgtctcatgtaaagatcgtgcataacaatgacacttggtcgaaatgcgattattgcgataagcagttcaaatctaaaagaaatatacgcagacacatcgaatatacgcatttaggtatgaaaagatataagtgcattgaatgcgagacgctattcaaagagaaacggagtttgagaaagcacgtgcgtacgaagcacccgaattcagtgttgtttcccgaatgtcatatatgccacaaaagattcgaatcggcgaaatcttgtaagatccatttgaaactactgcattcattcaatatgaatacgcatccttgtggtttatgcaccatttcattcagttcgaacgaagctctcacaattcacctccagacgaaacatttggctgaagatgaaatttacaagtgtgaagaatgcaatttagtattcaaagggcaagagaactttgaacagcacaacgagcaatgccatgtgaatttgctccccaacataaagcagaaggtgctaccgcgctgtatcttatgtatgaaggattttagtacgcgtaaaactctaaagcgtcacattaagaaattccacgattgtttcgaggtggacgagctcgcaaactttggttcaagaaggcgaatattcaacgtggaatgcgatcaatgtatgaagaactttaacggtgacctccactacaataaatatattaaacagaaacatttgcgtgactccatcatattcaaatgcgaaacgtgcgggagttcgtataattctttggaatactctatacagaggtataaatttatgaatttggaagttaataaaagtaaaatgatattaagtgaactgtgtacagcagaaatgagcgatgaaggggaggcgtctcatttaggatttggatctttacatgaaatgatggaaccggaaagcaccactggtgacatgaaacaggaaactgttgaagtatcgaacactgttataaaattagagccaatgtcaccttaa
- Protein Sequence
- MYQSLDYVCDYCSRTFTRKYNLQTHIENCHINSSCYCDICEQTFGSPAGLQLHLSRGHNRHSQPFPECDICGRIFTRKQNIVSHMITVHLQGKLSKIRCRLCSKTFTTDRNLKRHVNQLHNTDVEYPTCDECNKVFEGKQSLLAHIQSMHYTESGPNQCNLCERVYINDRNLQKHMEVCHREKEEFRCDLCPKVYTSNRSLRRHLRTTHVSEDREPLKCDICYKVIFGKENLDSHVHFFHSAQEDCSTNDVSEYNVKTNDVVCESCNETFDEEPKLRQHVKNNHSFKTFYRYCKRSLLKQMSESKKNVFFCCEYCSYSFTNVYELKNHMRVNHDKEYSMSTCNVCFDRFYSRDTILEHKKTCLPPDNVNTCNNCDKLFTDISSLEFHMRIFHPQAQIADSNITSTNTEDADGGSYRCRHCDRVYYSDRSLKHHIKLKHTTDEAMECCYCGKICNNKYYLASHVKIVHNNDTWSKCDYCDKQFKSKRNIRRHIEYTHLGMKRYKCIECETLFKEKRSLRKHVRTKHPNSVLFPECHICHKRFESAKSCKIHLKLLHSFNMNTHPCGLCTISFSSNEALTIHLQTKHLAEDEIYKCEECNLVFKGQENFEQHNEQCHVNLLPNIKQKVLPRCILCMKDFSTRKTLKRHIKKFHDCFEVDELANFGSRRRIFNVECDQCMKNFNGDLHYNKYIKQKHLRDSIIFKCETCGSSYNSLEYSIQRYKFMNLEVNKSKMILSELCTAEMSDEGEASHLGFGSLHEMMEPESTTGDMKQETVEVSNTVIKLEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00114274;
- 90% Identity
- -
- 80% Identity
- -