Sric000280.1
Basic Information
- Insect
- Samia ricini
- Gene Symbol
- -
- Assembly
- None
- Location
- BLXV01000015:11581944-11582306[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-09 1.2e-06 28.3 0.0 4 37 14 48 11 53 0.88
Sequence Information
- Coding Sequence
- atggaagagaagaaaaagaaaggatcgtgggagccacagatcttacatacagctattgataaggttatgtcaaaagaactgggtgtaagacaagctgcaatgccatacagtattcctaaaagcactgtacatgacaaaataaaggcgctaaatcgaggagaagtaacgatgaaaccaaagttgggtaggttcactagcaccttttcaccagagtatgaacaagtcctggtggaccacgttaaagatttatctaacagatgtataccgctcatgaaaaaggagtttctgatgttaacctacgacttagctgaggtcatgaagattcctcgtctatttaataaagaggaaggcagtgctggttag
- Protein Sequence
- MEEKKKKGSWEPQILHTAIDKVMSKELGVRQAAMPYSIPKSTVHDKIKALNRGEVTMKPKLGRFTSTFSPEYEQVLVDHVKDLSNRCIPLMKKEFLMLTYDLAEVMKIPRLFNKEEGSAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00822853; iTF_01312164; iTF_01312163; iTF_01312166;
- 90% Identity
- iTF_01312164; iTF_01312163; iTF_01312166;
- 80% Identity
- -