Sric014010.1
Basic Information
- Insect
- Samia ricini
- Gene Symbol
- -
- Assembly
- None
- Location
- BLXV01000016:9103313-9103678[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.5e-10 4.3e-07 29.7 0.0 3 37 13 48 11 53 0.89
Sequence Information
- Coding Sequence
- atggaagagaagaaaaagaaaggatcgtgggagccacagatcttacaaactgctattgataaggttatgtcaaaagaactgagtgtaagacaaactgcaatgcgatacaatattcctaaaagcactgtacatgacaaaataaaggcgctaaatcgaggagaagaagtaacgatgaaaccaaagttgggtaggttcactagcaccttctcaccagagtatgaacaagtcttgatggaccacgttaaagatttatctaacagatgtataccgctcatgaaaaaggagtttctgaagttaatctacgacttagctgaggtcatgaagattcctcatctatttaataaagaggaaggcagtgctggttag
- Protein Sequence
- MEEKKKKGSWEPQILQTAIDKVMSKELSVRQTAMRYNIPKSTVHDKIKALNRGEEVTMKPKLGRFTSTFSPEYEQVLMDHVKDLSNRCIPLMKKEFLKLIYDLAEVMKIPHLFNKEEGSAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01312167;
- 90% Identity
- iTF_01312167;
- 80% Identity
- iTF_01312163;