Sric001504.1
Basic Information
- Insect
- Samia ricini
- Gene Symbol
- retn
- Assembly
- None
- Location
- BLXV01000011:5120059-5322553[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2 8.2e+03 -2.5 0.1 20 38 71 87 51 92 0.63 2 2 2.1e-26 5.2e-23 81.4 0.0 1 89 202 288 202 288 0.96
Sequence Information
- Coding Sequence
- atggccgacgccgaccgtgattcggaccttggcgatgacagtcccgtgtccgcacggtctgaaggtgaatcatcaggggagcagtcttgcgagagttccgatgaaggcgttggtcgagacgcgcccgctaatctccaaggtcatcagcctcatcagcagttacagcagcatcaagccctgccacctcaccagcctcagatgaacatgggcctccatccgcctgtcggacatcaacagataaacgctcatccgttgacacatcaacatcagaggaactcaccgagaccgcttgaaagggaattgaaagtacgggatgacttcgaatcattgaaatcttcactccaccctcatttatcgtctttggcctcgttggcccagggagctccgttatcgacctctagcagtgtcttcgctcttgccggagcgggtgctacgggagggttcccatacgctccaccagcgtttcttgccccagcaccaccgccaccggctcaaccggtgggttctgcttcgtcttcttcatcagaaggcagcgccgcagggtggagctttgaagaacagtataaacaggtccgacagttgtatgagatcagcgatgatccacagaggaaggagttcctagatgatttgttctcctttatgcagaaacgtggtacgcctataaaccggttgccgataatggctaaatcggtattagatttatacgaattgtataatctggtgatagcgcggggaggtctcgtcgaggtcatcaacaagaagctgtggcaggagatcatcaagggactccgattgccatcctccatcacgtctgctgccttcacactacgcactcaatatatgaagtatttatacgattatgaatgtgagaagaagaacttgtccactcgcagcgagctggacgccgctatagaaggcaacaaacgggagggaagacgcgcctccggacaatacgatgcacaagcggcacttgctatgccgcctctaagtcgtggtgtaccagcatccttggcccagctctcgcagcatatgcagccgttatcattatcattgggtggtggtgtcgcgggagtcccacggctaccaccgctaccaccccacgcaccgcacatctctcagcacgacatcgaataccgcgtcagagagtacatgaaaatgatacagcagcaacgggaacttatgaggaacggctcagaatcaccgccggggagtaacgggcccgcgtctatgatatcgccgcgcgacgccgcagcactgagcgcgattgacgtctcccggctaacactctggtctctttacaataacaacaacaacagcccgcagccggacctcgagccgcaacgggaggctttaaacttgagcgagagccctaactcgagcacgagcggcggcggcaagcgggaagcgtgccggtcgcccccgcctccgccggcgaaacgccgcacgcctcgaccgctctccccgcgcgcgcctagcccggtggcccattcgtccaatgcgcctccgcccccgcagccgcagccgcaggcgaaggcgcaggcgcagccgcacctcaacggcgtcaatggagctgctttcaaaatcagctccagaggtgactcgagcacaggcgatcaacaactggtcgtgacaatagaaataaatggaataacgtacgaaggcgtactgttcccatcacaaaggcaaaacggtcacaggcaaatggtatcttaa
- Protein Sequence
- MADADRDSDLGDDSPVSARSEGESSGEQSCESSDEGVGRDAPANLQGHQPHQQLQQHQALPPHQPQMNMGLHPPVGHQQINAHPLTHQHQRNSPRPLERELKVRDDFESLKSSLHPHLSSLASLAQGAPLSTSSSVFALAGAGATGGFPYAPPAFLAPAPPPPAQPVGSASSSSSEGSAAGWSFEEQYKQVRQLYEISDDPQRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLSRGVPASLAQLSQHMQPLSLSLGGGVAGVPRLPPLPPHAPHISQHDIEYRVREYMKMIQQQRELMRNGSESPPGSNGPASMISPRDAAALSAIDVSRLTLWSLYNNNNNSPQPDLEPQREALNLSESPNSSTSGGGKREACRSPPPPPAKRRTPRPLSPRAPSPVAHSSNAPPPPQPQPQAKAQAQPHLNGVNGAAFKISSRGDSSTGDQQLVVTIEINGITYEGVLFPSQRQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00318670;
- 90% Identity
- -
- 80% Identity
- -