Sric015657.1
Basic Information
- Insect
- Samia ricini
- Gene Symbol
- Rfx2
- Assembly
- None
- Location
- BLXV01000003:16827639-16861576[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6e-37 6.1e-33 113.4 0.1 3 78 178 253 176 254 0.97 2 3 2 2e+04 -3.9 0.0 14 31 296 313 292 316 0.81 3 3 1.2 1.2e+04 -2.9 0.0 24 32 615 623 600 630 0.68
Sequence Information
- Coding Sequence
- atggcagcgcgtcttgcggcgcccgcacagggtgacggtacgggaggcggcgcgtcgccgtccgcagtgcgggaacttattgtcataccagatctaccaaactctattcacctccagcacaccatacaacaggtttccagtaccgtggtggaagtgaacggcgacagttccgggcattccagcccgacggcggacgcacagcacacatacatcaccgtcgcaagcgagggcgggaatggagtcaactaccacgtccagtacatcacggaaccccaggagatctacactcagacccaccagacgcataccatggaaacgttacgttcgtacccggtgtacggcgtgaccagcgtcgccgctgagggctcctccgcggactcgggctggcccgggactgcgccctcggactacaccgcatatggagttgttgtggcaggtggaggggcggaggccggtgaggcggaggagggcgagggggagggcgggtccccgccgggcactccgggcgctccgcccccgcggatgccgcccgcgactgtgcagtggctgctcgaccattacgaaaccgctgaaggcgtgtccctgccgcggtcgacgctgtactcgcactacctgcggcactgctgcgcgcaccgactcgagccggtcaacgcggcctccttcggcaaactgattcggtccgtgttcgtggggctgcgcacgcgtcggctcggcacgcgcggcaactccaagtaccactactacgggattcgggcaaagcgcgcgcccgacgccgaacccgaacccgccgccgccaccgcctcaccacacctgcaccatccggggaacaacgacggcgctcacgatactgacgcacaggagacgaggttattatcgaaggaccgcgagtgcagcggcagcgtcgtgggcaccggcggcgcctaccgacagtacctgggctcggtctccgccccggagccccccgacctgctggtgcccgagctgcctgacgacatggccccctcagctctgcaggctctcagggaacatcatcgagagcacggggtcgagttcctggaggcggtgagcgctctcgacacgagcgccgtggagcgcgcccgccgggcgttctggttgcgcactgagggcggtgcgggcgtcgggggcgccaccggaggcggtgagctctgccggcgcacgctgtggcggctgatggcgcgcgcggacgtggcgcggtggctgcgtgccgcggacctgcagctataccagcgcgccgtcgaactgctgctaccggacgtgctcaggccaataccgccgcatcttacacaggcgatacgtaacttcgcgaagagcttggagggcgcgctggcgacgggctcgggcgtggggggcgccgggggcggatgcgcgccgtcgagggcgctgcgggcgcagggcgcggcggcgggggcgttggcggcggcgctgcgccggtacacctcgctgaaccacctggcgcaggcggcgcgcgccgtgctcaccaaccaccaccagatacaccagatgttgtcggatctgaaccgcgtggacttccgagtggtgcgcgagcaggcggcctgggcctgcgcctgcgggagcgccgccaccgtgcaccggctcgaggcggactttaaggcgacgctgggccggggcgcgacgctggagcagtgggcgggctggctggaggcgtgcgtgcgcaccgcgctcgctccgcacgagcgccgcgccgactacagcgcgcgcgcgcgtcggctgctgctcgactggtccttctactcctccctggtcatacgcgaactcacgctcaggtcggcggcgtctttcggttcgttccacctgatccggctgctctacgacgagtacgtctcgtacctgatcgagagacgcgtcgcggcgcatcggcgcgtgccccccatcgccgtcatgcagcgcgctctcgaggatgacgatgatctcctggaggagaacccacgacctgaaggtgacgaggaggagcacgagcaggactgggactggggggacgacgatgacgatgaagacgataccgtcgactgcaagaaaccgaaaatacaatgcgagtga
- Protein Sequence
- MAARLAAPAQGDGTGGGASPSAVRELIVIPDLPNSIHLQHTIQQVSSTVVEVNGDSSGHSSPTADAQHTYITVASEGGNGVNYHVQYITEPQEIYTQTHQTHTMETLRSYPVYGVTSVAAEGSSADSGWPGTAPSDYTAYGVVVAGGGAEAGEAEEGEGEGGSPPGTPGAPPPRMPPATVQWLLDHYETAEGVSLPRSTLYSHYLRHCCAHRLEPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKRAPDAEPEPAAATASPHLHHPGNNDGAHDTDAQETRLLSKDRECSGSVVGTGGAYRQYLGSVSAPEPPDLLVPELPDDMAPSALQALREHHREHGVEFLEAVSALDTSAVERARRAFWLRTEGGAGVGGATGGGELCRRTLWRLMARADVARWLRAADLQLYQRAVELLLPDVLRPIPPHLTQAIRNFAKSLEGALATGSGVGGAGGGCAPSRALRAQGAAAGALAAALRRYTSLNHLAQAARAVLTNHHQIHQMLSDLNRVDFRVVREQAAWACACGSAATVHRLEADFKATLGRGATLEQWAGWLEACVRTALAPHERRADYSARARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVSYLIERRVAAHRRVPPIAVMQRALEDDDDLLEENPRPEGDEEEHEQDWDWGDDDDDEDDTVDCKKPKIQCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -