Spla004058.1
Basic Information
- Insect
- Salpingus planirostris
- Gene Symbol
- MBD-R2
- Assembly
- GCA_949788335.1
- Location
- OX460919.1:2007784-2012234[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.2e-16 6.8e-13 48.0 0.1 6 75 419 488 415 490 0.92 2 2 0.3 4.9e+02 0.4 0.0 29 50 551 573 541 577 0.76
Sequence Information
- Coding Sequence
- ATGGGTCGAAAATGTTCCGTGGAGAGTTGCCTTTCGGAATCCAACCGAAAGGAGGACTCGGGTGTAACATTTCACAAGGTCCCCATGCACGCAGTGATCCGCCCCAAATGGATGGCCCTATGCCGCATCCCCGAGGACAAGAAGAGCCAAAGGGCCATCTTCGTCTGCTCGAGACACTTCCTCCGAGTCGACTTCTGCAACTTCAGGGGCAAAAAGTACATGCTGCGACAAGGCGTCCTGCCCAGCGTCTTCCCGTGGGACAAATCCAAGCTGGACGCGATCAAAGTGGCCAAAGATCCAGAACCGTCGGCGGTCAAGGATGAGGCAACCGAGGAGACGCCACAAGTGCCGGAGAAAAGCGACGAATCGACCGAAACCGAGATCAAAACCGAAGCCGATCTCGAAATCAAGGAGGAAATCGAGACGGAAGTGGTCGAGGTGAAACCGCCACCACCGGAGACTCCGTCGGTGAGTGAGCCGCCTGCAGCGGCCGCCGCTCTCCCTCCACCCGATATTAGCGCTCCCGTAGAAAGCGGAGGTGATGACGTCAAAAGTAAGCCACCTAATTCGGGCGGGTCCATAGATTTCGCGATAAATTCTCGACTAGAGGCGTTAGATTTTAACAATGCTTGGTACCCAGCACGGATCGTCGAGAAAGATTACGAGGAGAACGAGGTCTTGATTCATTTCGAAAAGTACTCGAGCAAGTACGACGAATGGATCAACATGGACAGCCCCCGATTGAGGCCCATCAGTCTGGGGCTGACCAGCCCCGCGACGGTCACTTCTGCGACTGCTGCTATGGCGGCTACCGCCCAGTTTGCGGTCGGAGAACGCGTTTTCGCCACTTGGAGCGACGCAAGAAAGTTTCCTGCCACCGTAACCAAAGTTTTACCAAACGACTCTTATCAAGTGTTATTCGATGACGGCTTCGTAAAGACCCAAAAATCCCACCTCTTGTGCAAATATCAAGGGGGTCAAGTGCAAGCGTCGCCTCTTTTCGATCCGGTCCAGAGTACGAAACAGGAGCGCCGCGAGAAGAAGCGCAAAATCAACATCGCTCAACTTTTCGGAAAGCGCCAAAAACTCGACACCGAAGagaaatcttcaaaatccgGCCCTACGACCCCCCAAACAGGGCAAAGCCCCAGCGATTCAGTCTCCAGCGTATGGATGCCAGAGTGGATTAACGGTAAACCCGTGGGTGTGGATTCGTTCATAGAGTCGGTCGACGGTCCCAGGCCGTCGATAATAGTCGCGGATCCGCGTTTACCGACCGGATGGGCCAAACATCTATCGCGCAGAATCAACGGAACCTCTGTCGGCAAATGGGATACAGTCATAGTCAGCCCGGACAATCGCCGATTCCGCTCGAAGAACGACGTGAAAAGCTACCTGGAGGAGCACGGCCTGAAATACAACTGGTCCATGTTCGATTTCAGTCTGCACCGAAACCGGATGCGCCAAAAGCAGGACACCTCGTCTCCCGTGCAACGCCCGCCGACACAGCCGACGCAACCGGAAGCGGAAGCGGCGTTACCGACCGAAGACGAAGAAGACGACCCGAACCGCCTGAAGATCCCCGTGGTCGACGGCGGCTATCGGTGCCCGATCGAGGGCTGCGGCAAAGCGTTCCGGCGCGAGACCCTGGCCCAGATGCACGTCAAGTACTACCACCCCGAGTGCACGAAGTTCCTCGACTCGACCCCGAACGTGGCCGACCTCGCGTACGCCCGCACCGTCGGCGAATCGCTCGACAAGTCGCCGACGCACGTCAGGACGGCGACGCCGAAGGCGTCGACCCGGAGCTACGGCCCCAAGGCGCCCGTCGTCAAGGCGACCGGCGAGGACGTCAAGCCGCTCAGTCCGGCGGCCATGCTGAAGAACTCGAAAGACTCGGAGATCATTAAGCTGCTGAACACTAAGCCGTTCGATACGAAAAAGGAGCCGGAGATCAAACCGCTGCCTTCCGGTCTGCCCTCGAGCATGTACCCCGATATTAAGTTACGCGATCTCCTCCAGAAATCTGAAGGGATACCGGCGAATCGCGAAGACATAAATCTGAAAACGCTGAGCACTACGAGACCGCCGACCGGGATCAAGACGTTGTTACCGGTCGTCCGGCCCGAAGGAAAGTCGCAACATTTCGGCGGGGTGAAACGCAAACGCGGCGCTCCACCCCCGGAATGTCCGGAGACTCCGGTGATTGCAAAAGGTAATTTTAATAGCGAGCGACTGTTAGAGGCGCCGCGAACGACGGACGCCGCCGTGACGCCGCCGGCAGAGGCGCCCCCTAATAACGTTATCATTGAAGGTGGGCAGGTGATAAAGATCGTCCGCATGAAACAGGAGGAGATCATAAATTGCACGTGCGGCTACCCCGAGGAGGACGGGCTGATGATCCAGTGCGATCTGTGCCTCTGCTGGCAGCACGCGTTCTGTAATTCGATCGAGCGCGAGAGTCAGGTGCCCGAGAATTACGTTTGCAAGATTTGCCAGAATCCTCTGCGGCAGCGGCTCTCGAAAAAGTACAGTCACGATCAGGAGTGGCTCAAGCAGGGCCATCTCTCTAGTACGAGTTTCCACGCGAAAGACGAGGAGGCGATGGCGAAGAGGTTCGAGAAGCTGAAAAAGTCGCACGATATCTCCGGCGGGCTGATCGAGCTCAAAGAGTACTTGGGCAAGCTCAAAATCAAGCTGAAGATCGCAGAGGCTAAAAATCATCCGAAATTGTATCTATGGTCCAAACCTTGGACAAAACCGGAACCGAAAGAGAAAAAGGAAGAACCGTCAGAGTCGATGCTCATGACCATTCTTAAAGGTGCGAAAGAGGAGGAAGAGAATACGATAAAAGCTCCCACGATTCCTCAACCAGAGGCTGCCATAAATTCGGCCGATTGTAGGTTGAATCTCTTGGAACATTTATCGCAAGTCCAGGCTTCGGTGGATGAGCGTCTCGATGAATTCGAGAAGCAGATCGATGCCCTCGAAGATGAGTCGTTTTACGAAGAGGATCCGAATTATCCAAGGACCAGACAAACTTTGAATATGTTGATTAAGGATTTAGATACTTTGCACGAGTTTAGTCAAGTACCGACTCTCTGTTTGCCTTCGAATAACGGTGTTACTTTGTAG
- Protein Sequence
- MGRKCSVESCLSESNRKEDSGVTFHKVPMHAVIRPKWMALCRIPEDKKSQRAIFVCSRHFLRVDFCNFRGKKYMLRQGVLPSVFPWDKSKLDAIKVAKDPEPSAVKDEATEETPQVPEKSDESTETEIKTEADLEIKEEIETEVVEVKPPPPETPSVSEPPAAAAALPPPDISAPVESGGDDVKSKPPNSGGSIDFAINSRLEALDFNNAWYPARIVEKDYEENEVLIHFEKYSSKYDEWINMDSPRLRPISLGLTSPATVTSATAAMAATAQFAVGERVFATWSDARKFPATVTKVLPNDSYQVLFDDGFVKTQKSHLLCKYQGGQVQASPLFDPVQSTKQERREKKRKINIAQLFGKRQKLDTEEKSSKSGPTTPQTGQSPSDSVSSVWMPEWINGKPVGVDSFIESVDGPRPSIIVADPRLPTGWAKHLSRRINGTSVGKWDTVIVSPDNRRFRSKNDVKSYLEEHGLKYNWSMFDFSLHRNRMRQKQDTSSPVQRPPTQPTQPEAEAALPTEDEEDDPNRLKIPVVDGGYRCPIEGCGKAFRRETLAQMHVKYYHPECTKFLDSTPNVADLAYARTVGESLDKSPTHVRTATPKASTRSYGPKAPVVKATGEDVKPLSPAAMLKNSKDSEIIKLLNTKPFDTKKEPEIKPLPSGLPSSMYPDIKLRDLLQKSEGIPANREDINLKTLSTTRPPTGIKTLLPVVRPEGKSQHFGGVKRKRGAPPPECPETPVIAKGNFNSERLLEAPRTTDAAVTPPAEAPPNNVIIEGGQVIKIVRMKQEEIINCTCGYPEEDGLMIQCDLCLCWQHAFCNSIERESQVPENYVCKICQNPLRQRLSKKYSHDQEWLKQGHLSSTSFHAKDEEAMAKRFEKLKKSHDISGGLIELKEYLGKLKIKLKIAEAKNHPKLYLWSKPWTKPEPKEKKEEPSESMLMTILKGAKEEEENTIKAPTIPQPEAAINSADCRLNLLEHLSQVQASVDERLDEFEKQIDALEDESFYEEDPNYPRTRQTLNMLIKDLDTLHEFSQVPTLCLPSNNGVTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01311611;
- 90% Identity
- iTF_01311611;
- 80% Identity
- iTF_01311611;