Rfun039943.1
Basic Information
- Insect
- Rosalia funebris
- Gene Symbol
- stc
- Assembly
- GCA_037954035.1
- Location
- JAZFAV010000022.1:26368634-26373224[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.3e-10 4.2e-06 28.4 13.8 1 18 39 56 39 57 0.98 2 15 0.32 1e+04 -1.6 0.2 3 6 63 66 63 67 0.80 3 15 1.3 4.1e+04 -3.5 1.3 6 10 87 91 87 91 0.96 4 15 2.3e-06 0.073 14.9 15.9 4 19 104 119 97 119 0.87 5 15 0.62 1.9e+04 -2.5 0.2 9 11 136 138 134 139 0.72 6 15 0.71 2.2e+04 -2.7 2.0 5 10 148 153 148 153 0.93 7 15 0.0025 78 5.2 9.0 1 11 159 169 159 170 0.96 8 15 0.64 2e+04 -2.5 0.8 4 10 174 180 173 181 0.62 9 15 1.4e-10 4.3e-06 28.4 14.5 1 18 186 203 186 204 0.99 10 15 0.58 1.8e+04 -2.4 0.7 6 10 233 237 232 237 0.87 11 15 7.4e-05 2.3 10.1 12.0 5 19 246 260 243 260 0.81 12 15 0.12 3.9e+03 -0.2 0.4 6 11 263 268 263 269 0.94 13 15 1.7 5.3e+04 -3.9 0.4 9 11 278 280 278 281 0.74 14 15 1.3e-08 0.00041 22.0 19.8 1 19 296 315 296 318 0.97 15 15 0.013 4e+02 2.9 17.6 1 18 325 343 325 344 0.93
Sequence Information
- Coding Sequence
- ATGATAATACAAGAATGTTATTGTGGCAGACAAGGTAGAAGAGTGGCTTGCTCTGCCGAATTTTCTGGTAATACTCAATATGCTTGTGAGGATTTTTGTGGAAAGACATTGTCATGCGGGAATCACAAGTGTCAAAAAATATGCCATGAAGGACCTTGTGAGACTTGTGTTAGAGATGTTAATGTGATACACACCTGTCCCTGTGGAAAAACACCTTTGGATAAACCACGAACTTCATGCAATGACCCAATACCTTGTTGTGAGAAGatatgtAACAAACTGCTCACATGTGGGCAGCCATCTTCACCACATAGATGCAGAGAATTATGTCACGAGGGCGATTGTCCGCATTGCCCTTTAACCACTGTTGTTCGATGCCGTTGTGGTCATATGGATAAGGAGTTGCCGTGTCATGCAGTAACCACTAAAGCAGATGATGCTAGATGTGAAAAGAAATGTACAAAGaaACGTATGTGTGGTAAACACAGATGTAATCAACGATGTTGCATTGAAATTGAACATTTCTGTCCACTTCCATGTAATCGTCAGCTCTCCTGTGGTCAGCACAGATGTGAGCGCACATGCCATTCTGGTCGATGTCCTCCATGCATTGAAACGAGTTTTGAGGAATTGTACTGTGAATGTGGAgcgagtgtgttatatccacctatTCCTTGTGGTACTAAACCTCCTGCCTGCAATGAACCTTGTTCAAGGGAACGCCCATGTGCTCATACTGTAAATCATACTTGTCATACAGGGCCTTGTCCTCCTTGCACTGTGCTTTGCAAGAAGTGGTGTCATGGCCATCACGAACAACGATCAGCCATTCCTTGTCATCAAGAGACTTTCAGCTGTGGATTACCGTGTGGAAGAAGGATGTCTTGCGGAAGACACAAATGTAATAAGCCATGTCATGAAGGTCCATGTCCAATTCCTTGTAAACAGCCCTGCAATATACCCAGGACTCTGTGTGGGCACCCCTGTGGGAAACCATGTCATGACCCACCTTGCCCAGAGAGCAGTTGCAAACAAAATGTTCCTGTTACATGTTCATGTGGTCTGCAGAAAAGTAGTCGACCATGTATGGAAGTGGCGgaagaattcaaaaatattgaaatggctCAACTTAAAGAGAAAATGGGTGATTTATCAAAAGACCAAACAGTAGATATTACAGATATTATCAGTAAACCAAAGAAACCTGTGGTTCTCAAAATtttggAATGTACCGAAGAATGTCGTGTGCTGGAAAGAAATCGACGGCTTGCCATTGGTTTACAAATACGCAATCCTGATCTGAGTCAAAAGTTGACTCCCAAATATACAGACTTCATGAAGCAGTGGGCAAAGAAGGACCCTTATTTCTGTCAAAGAATTCATGATAAGTTATCAGAACTTGTCCAATTGGCCAAACAGAGTAAACAGAAGAGCCGTTCGTATTCTTTTGAGTCCATGAATAGAGATAAACGTCATTTTGTCCACGAATACTGTGAACACTTTGGAGTGGAAAGTGCGGCTTATGACATGGAACCGAACAGGAACGTGGTTGCCACAGCTATTAAAGATAAATCTTGGTTGCCTAGTATGAGTTTATTAGAGGTGATTCAGAGAGAAAATGGCCAGAGAAAAGTACCAGGACCTATATctgtttttagtaaaaatacCTCGAGTAAATCTGAAAcagtttctttaaaattatcatgCCAAAATCAAAGGCCGATGCATTCTGGAGAACTTGTAGATTATTTTGATGCACAAGTATGA
- Protein Sequence
- MIIQECYCGRQGRRVACSAEFSGNTQYACEDFCGKTLSCGNHKCQKICHEGPCETCVRDVNVIHTCPCGKTPLDKPRTSCNDPIPCCEKICNKLLTCGQPSSPHRCRELCHEGDCPHCPLTTVVRCRCGHMDKELPCHAVTTKADDARCEKKCTKKRMCGKHRCNQRCCIEIEHFCPLPCNRQLSCGQHRCERTCHSGRCPPCIETSFEELYCECGASVLYPPIPCGTKPPACNEPCSRERPCAHTVNHTCHTGPCPPCTVLCKKWCHGHHEQRSAIPCHQETFSCGLPCGRRMSCGRHKCNKPCHEGPCPIPCKQPCNIPRTLCGHPCGKPCHDPPCPESSCKQNVPVTCSCGLQKSSRPCMEVAEEFKNIEMAQLKEKMGDLSKDQTVDITDIISKPKKPVVLKILECTEECRVLERNRRLAIGLQIRNPDLSQKLTPKYTDFMKQWAKKDPYFCQRIHDKLSELVQLAKQSKQKSRSYSFESMNRDKRHFVHEYCEHFGVESAAYDMEPNRNVVATAIKDKSWLPSMSLLEVIQRENGQRKVPGPISVFSKNTSSKSETVSLKLSCQNQRPMHSGELVDYFDAQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01106861;
- 90% Identity
- -
- 80% Identity
- -