Rfun018619.1
Basic Information
- Insect
- Rosalia funebris
- Gene Symbol
- -
- Assembly
- GCA_037954035.1
- Location
- JAZFAV010000011.1:12323232-12328098[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.7 3.7e+04 -3.3 0.0 27 43 172 188 170 189 0.64 2 9 0.2 4.3e+03 -0.3 0.0 24 53 229 258 221 259 0.82 3 9 0.26 5.5e+03 -0.7 0.1 22 52 285 315 275 317 0.78 4 9 0.00021 4.4 9.2 0.0 23 46 314 337 309 343 0.86 5 9 0.012 2.5e+02 3.6 0.0 21 48 340 366 335 369 0.87 6 9 0.011 2.2e+02 3.8 0.0 23 46 398 421 391 428 0.80 7 9 0.074 1.6e+03 1.1 0.1 21 43 424 446 416 450 0.82 8 9 0.00071 15 7.6 0.0 21 52 452 483 441 485 0.86 9 9 0.0071 1.5e+02 4.4 0.0 21 44 480 503 478 510 0.88
Sequence Information
- Coding Sequence
- ATGGAAGAATGTGAGTTAAGAAATATATGTAGAGCGTGTTTATCAGAAGAAGGTGAATTTCAGTCGGTGTTTGTACCTGACGCTAATTCTGGTCTATCCCTTCATTTGTCAGAAATGTTAACTGCATGTGCCTCAGTACAGATAACATTAGGTGATGGTTTACCAGAACAGATTTGTTCCGCCTGTGCCACTCATACAGTAAATATGTACCTATTCAAACAGAAATGTGAAAAAAGTGATACAATTCTTCGACAAAGACTACGAAAAGTGTCCGTTTATTATGAACAAGATTTTTTAGAAAGCAACACTAATGAAAATAACGAAGAATTAAAACCTGAGGTAAATGTGGACGATACTAAAGTGTGTCAGAGTGAAACTATTCTTGAAGGATTAGATAACTTTGATTTTGATACTTATAAAAGTGACAGCGAAGATTTCCCAGAAAATGTCAATGAAGTAGATATTCAAAGTGAAATGATGttaaaacaacataataaagTAAAGGAATTTGAATGCAATATATGCTTCAAGCAGTTTACTCGAAATGATCTACTAATAAGGCACAAAATTGCTCACGCGATGAAAATGGACGaacaaaaaattgaatttgATGGCACTTTTCAAATGGAAGagaatgatgatgatgacgatGATAATCTCATGAGAATAAAAAGCGAGGAGTTTATGTATACCTGCTCAGATTGTGACGTCTTTTTTATTCAAAAGGATGATCTCGACAATCATATGACGCAGGAACATGACAAAAAGGAAGGAATTTTCAAGTGTGATGTGTGTATGaaagcttttaataaaatggcCCATTTAAACAGGCACGCCAAGACACATTGTATTGAAAAAGCTTATAAGTGTCCATCCTGTGAAAAGGGGTTCACGAGACAAGAGCAACTGAACCACCACATGAATATTCATTCTGGAATTAAACCTCATATCTGTGATATATGCTATAAAgGATTCAACCAGATATCCAACTTAAAAGACCACATGCGGACCCATAACGGAGAGAAACCATTTTTGTGTTCAACTTGTGGTAAGGGCTTTAATCAGTTAGGAAATCTCAGGCAACATTCCATTAGGCATAGTGGAATTAAGGCGCATTTATGTAGTACCTGTGGCAACGGATTTGCTAGTAAAGGCGAATTATCCGCGCATCTTAGAAAACATACAGGTGCTCGACCTTTTGTGTGTCCAATATGCGGGCATGGGTTCACGACGTCCAGTTCCCTGACCAAACATAAACGAATCCACTCCGGAGAGAAACCCTACGAGTGCGACGTTTGCAAGATGAAATTCTCGAGGTCCGGCATATTGGCGCGGCACAAACGAACGCACACAGGCGAGAAACCATACGTCTGTAAGTTCTGCGCCAAAGCGTTCTCCCAGTCCAACGATTTGACGTCGCACCTCCGGATACACACAGGAGAGAAACCGTATATTTGTGACGAGTGCGGCCAGGCCTTTAGGCAAAGTTCGGCGTTGAAGACGCACAAAAAAACTCACATGGATAAGAATGTCATTGTGGATGCTAAGCCGATAATTATTAGCAATATGGTTCCCGCAAATTTCCTGACAACTTACCAGTGa
- Protein Sequence
- MEECELRNICRACLSEEGEFQSVFVPDANSGLSLHLSEMLTACASVQITLGDGLPEQICSACATHTVNMYLFKQKCEKSDTILRQRLRKVSVYYEQDFLESNTNENNEELKPEVNVDDTKVCQSETILEGLDNFDFDTYKSDSEDFPENVNEVDIQSEMMLKQHNKVKEFECNICFKQFTRNDLLIRHKIAHAMKMDEQKIEFDGTFQMEENDDDDDDNLMRIKSEEFMYTCSDCDVFFIQKDDLDNHMTQEHDKKEGIFKCDVCMKAFNKMAHLNRHAKTHCIEKAYKCPSCEKGFTRQEQLNHHMNIHSGIKPHICDICYKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHSIRHSGIKAHLCSTCGNGFASKGELSAHLRKHTGARPFVCPICGHGFTTSSSLTKHKRIHSGEKPYECDVCKMKFSRSGILARHKRTHTGEKPYVCKFCAKAFSQSNDLTSHLRIHTGEKPYICDECGQAFRQSSALKTHKKTHMDKNVIVDAKPIIISNMVPANFLTTYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01310761;
- 90% Identity
- iTF_01310761;
- 80% Identity
- iTF_01310761;