Rped013747.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000005:145845166-145855068[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.0093 7.4 6.9 0.5 19 48 196 225 190 227 0.83 2 5 0.001 0.81 9.9 1.0 20 49 226 255 223 259 0.90 3 5 0.00091 0.72 10.1 1.3 18 49 253 284 252 288 0.85 4 5 0.011 8.7 6.6 0.4 22 44 286 308 284 314 0.79 5 5 0.00033 0.26 11.5 0.6 22 48 315 341 310 345 0.83
Sequence Information
- Coding Sequence
- ATGGACGGGTTCAAGAGCGGCGGAATTGTCGGGAAACCTATTCGTTGCTTTCTCGAGGATTGTGGGAAGCATATTTCTCTTCTTATAGCTGCTCCAGGATCTAGCCTTGATGGAGTTCCTGACAAGAAAGAAACTGAGTACTTCTTAGATGATCAGCCGTCTACTTCAGGCAGTGACCAAGTGTGGAAACACATTAAACAAGAACCGGCTGTGGAACTACCTAAATATTATGGAGACCTTGAGCATAAAGATAACGCAGTCTTCATCTGCCATCACTGCCAGCGAGCCTGGAAATCATTCATTTCACTGAGACGATGTGTTCAGAAGTGCTTCCATGTAACAGTCACTAAGTTCCTTGGCAAAAGACATAAGTCACCATCCACTGGAGTAAGAACATCTGGGTGCTATAGAAGTTCAAGTGGAGACATAAATTTGTCGAAAGACTGTGAACCTTCCACTGCAGTGGAGGAGAAATCGAAAGACTGTGAACCTTCCACTGCAGTGGATGAGAATCAATTTGTCTGTGGTGAAAGCAGTTACAGCACAAATTATAGTCACAACGTAAAGCACCACATTCTGGCTAAACATTCAAGTGAGAAACCTCACTCCTGCCCTTACTGTGAGTACAGTACTGCTCACAAGGGCCATCTAAAACAGCATATACTAGTTAAGCATTCAAGTGACAAACCTCACTCCTGCCCTTACTGTGAACACAGTGCTGCCCAGGCCACTCATCTAAAGCAACACATACTGGCTAGACATTCAAATGACAAACCTCACTCCTGCCCTCACTGTGAATACAGTGCTGTTCGGCCTAGCAATCTAAAGCAGCACATACAGGCTAAACATTTAAATGACAAACCTCACCCCTGCCCATATTGTGAATACAGTGCTGTTCGGTCTAGCAATCTAAAGCAGCACATACTGGCTATACATTCAAATGACAAACCTCACTCCTGCCCATACTGTGAATACAGTACAGTTCGGTCTAGCAATCTAAAGCAGCACATACTGGCTAGGCACACCGGAGACCAATCTAACTTATAG
- Protein Sequence
- MDGFKSGGIVGKPIRCFLEDCGKHISLLIAAPGSSLDGVPDKKETEYFLDDQPSTSGSDQVWKHIKQEPAVELPKYYGDLEHKDNAVFICHHCQRAWKSFISLRRCVQKCFHVTVTKFLGKRHKSPSTGVRTSGCYRSSSGDINLSKDCEPSTAVEEKSKDCEPSTAVDENQFVCGESSYSTNYSHNVKHHILAKHSSEKPHSCPYCEYSTAHKGHLKQHILVKHSSDKPHSCPYCEHSAAQATHLKQHILARHSNDKPHSCPHCEYSAVRPSNLKQHIQAKHLNDKPHPCPYCEYSAVRSSNLKQHILAIHSNDKPHSCPYCEYSTVRSSNLKQHILARHTGDQSNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01309849;
- 90% Identity
- iTF_01309849;
- 80% Identity
- iTF_01309849;