Rped004516.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000002:254640117-254655336[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.03 24 5.2 0.3 10 48 220 260 216 265 0.70 2 8 0.0075 6 7.2 0.2 23 48 264 289 258 291 0.87 3 8 0.01 8.1 6.7 0.4 21 51 291 321 287 323 0.84 4 8 0.0034 2.7 8.3 0.2 22 48 321 347 315 349 0.85 5 8 0.032 25 5.2 0.1 21 49 349 377 344 379 0.88 6 8 0.0063 5 7.4 0.1 21 48 378 405 375 408 0.90 7 8 0.001 0.81 9.9 0.6 17 48 403 434 401 439 0.83 8 8 0.0014 1.1 9.5 0.1 22 48 437 463 432 466 0.90
Sequence Information
- Coding Sequence
- ATGGAATGCATTTATATCAAACAAGAGGCGCTCACTGATGAGGAATGTCACCCAAGTTCATCTTCAGAAGGTGATTCCCCTTGCCATGAATCTGAGCCCAGACCAGGAACATCATCACCCAGACCTGAGTCCAGTCCATCATCAAATCCAGGTGATGCTTCCCCCAGCAGAGAATATGATGAAAGCCAAGAACCATCATCACCCAGACCTCAATCCAGTCTCTCATCGACATTAGAGAAGGAGGGCGCAACAATAGAGTGTGTTTACATTAAAGAAGAAAATCTCTCCGATAAAGAATATCTCGAACCTTCATCTACAGATTTACGTTTGAACCTTACATTACATTCTGGTGTTTTGAGAAACTCTGAGACTGCAAATAGCTCCATAAATGATGGAGTCAATATCAACAAGGAAGTCTCAGCGGGACATGTTGAAGCAGAAAACCAATATTCTTGTGTAGAAGAGAGTTATGATGAAAGCTGTAGACCGAACATAAAACAGACTGAAGTGGCTAAGCGTAAGAGAGGCAAGTTGCAAAGGTGCCCTCATTGTGAGTATAGCACTGTGCATTCTGGCCACATGAAGATACACGTTATGGCGAAACATACTCAGCTCAAGCCTTTCAGCTGCAGTCACTGCGACTTCAGCACTGCAGAGCCTGGCACACTCAAGTATCATGTGATGGCGAATCACTCCAACGAAAAGCCTCTCTCATGCCATTACTGTGATTACAGGGCTATCAAATCGAGCCACATAAAGCGCCATGTGATGGCCAAGCACACAAATGTGAAACCATTCACTTGCCCTCGTTGCCCTTACAGCACAGTCCAATCTGACACATTGAAGCATCACATAATGGCGAAGCATACTAAGGAGAAACCACAAGCTTGCCCACATTGTGATTATAGAAGTGTCAAGTCTACTTACATAAAGCGTCATATAATGGCTAAACATTCGGATAAGAAACCTCTCAACTGCCCTTATTGCCAGTATTCCACTGTACAGTCTCCCAATCTAAAGGCTCACATAATGGCTACACATACTAATGAGAAACCTTTCTCTTGCCCTTACTGTCAATTCAGAACTTTCAAATCTAACCATTTGAAATTGCACATAATGGCTAAGCATATTAATGAAAAACCTCTCAGTTGCCCACACTGTGAATATACTACTGTTCAGTCTGGCACCCTGAAGCATCATATAATGTCAAAGCATAATGATGACAAACCCTTATCTTGCCCTCAGTGTGAATACAGAACTATTAGGTCGAGTCATTTAAAGCGGCATATTATGACTAAGCATACAGATGACAAACCTTTTCCATGCCCACATTGTGATTATTGTGCTGGTCAGTCTGGCACATTGAAACGTCATATAAATGCCAAACATAAAGACCAACATGAGTGA
- Protein Sequence
- MECIYIKQEALTDEECHPSSSSEGDSPCHESEPRPGTSSPRPESSPSSNPGDASPSREYDESQEPSSPRPQSSLSSTLEKEGATIECVYIKEENLSDKEYLEPSSTDLRLNLTLHSGVLRNSETANSSINDGVNINKEVSAGHVEAENQYSCVEESYDESCRPNIKQTEVAKRKRGKLQRCPHCEYSTVHSGHMKIHVMAKHTQLKPFSCSHCDFSTAEPGTLKYHVMANHSNEKPLSCHYCDYRAIKSSHIKRHVMAKHTNVKPFTCPRCPYSTVQSDTLKHHIMAKHTKEKPQACPHCDYRSVKSTYIKRHIMAKHSDKKPLNCPYCQYSTVQSPNLKAHIMATHTNEKPFSCPYCQFRTFKSNHLKLHIMAKHINEKPLSCPHCEYTTVQSGTLKHHIMSKHNDDKPLSCPQCEYRTIRSSHLKRHIMTKHTDDKPFPCPHCDYCAGQSGTLKRHINAKHKDQHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01309724;
- 90% Identity
- iTF_01309724;
- 80% Identity
- iTF_01309724;