Rped013780.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000005:146660607-146668920[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.00041 0.32 11.2 1.9 16 48 122 154 118 158 0.87 2 5 0.0094 7.4 6.9 0.1 21 48 156 183 152 186 0.85 3 5 0.0015 1.2 9.4 3.2 21 50 185 214 180 217 0.83 4 5 0.013 10 6.4 0.3 17 52 210 246 208 247 0.78 5 5 6.1e-05 0.049 13.9 0.4 20 49 242 271 238 272 0.85
Sequence Information
- Coding Sequence
- ATGGAGCGTCTTTATGATTGGTCAAATCCCCAAGAGGTGGAATTAGTGCATCGGATGTTGGAGGAGCCATTGCCTATCGATTTAGACATTATTGACGATGAAGAAGATGAGTATGTTTTGTTGTCAGTAGCTGCTGGAGATATTGATATTGTGCTGATCTCCATTAAAAATGAAGAGGACTCTTCGGGCGAGGAAAGCCTCTTTACGCCGAGAGAGTTCCACCTCAAAAAACCTGAGGCACCTTCCACTGGAGAAAATCTATCAGAGGAATGTTCAACTACAACTGCTAAGGCACAGAACCATTTTAACTGTTTTGAATGTAGTTACAGCACAAATTATAGATACCTCTTAAAGCAGCACATACAGTCTAAACATTCGAGTGACAAACCTCACTCCTGTCCCTACTGTGAATACAGTGCTGTTCGGGCTGCCCGTCTAAGGCATCACATACTGGCTAAACATTCAAGTGACAAACTTCACTTTTGCCCCTTCTGTGAATACAGTACTGCTCTTGCTCGCAATCTAAAGCATCACATACAGGGCAAACATTCAAATGATAAACCTCACACCTGCCCCCACTGTGAATACTGTTGTGTTAGGGCTAGCGATTTAATACGTCACATACAGAGTAAACATATAAGTAATAAATCTCACTCCTGCCCCTTCTGTGAATACAGTAGTGTTAGGGCTGGCAATCTAAAGCTTCACATACTGGCTAAACATTCAAGTGCTAAACCTCATTCCTGCCCCTACTGTGAATACAGTACTGTTCAGGCTCGCAATCTAAAGCATCACATACAGGGCAAAACATTTAAGTGA
- Protein Sequence
- MERLYDWSNPQEVELVHRMLEEPLPIDLDIIDDEEDEYVLLSVAAGDIDIVLISIKNEEDSSGEESLFTPREFHLKKPEAPSTGENLSEECSTTTAKAQNHFNCFECSYSTNYRYLLKQHIQSKHSSDKPHSCPYCEYSAVRAARLRHHILAKHSSDKLHFCPFCEYSTALARNLKHHIQGKHSNDKPHTCPHCEYCCVRASDLIRHIQSKHISNKSHSCPFCEYSSVRAGNLKLHILAKHSSAKPHSCPYCEYSTVQARNLKHHIQGKTFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01309833;
- 90% Identity
- iTF_01309833;
- 80% Identity
- iTF_01309833;