Basic Information

Insect: Riptortus pedestris
Gene Symbol: -
Assembly: GCA_019009955.1
Location: GWHBAZH00000005:153243416-153254211[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 4.2 3.4e+03 -1.6 0.0 25 48 182 205 173 210 0.68

2 8 0.044 35 4.7 0.1 21 48 207 234 202 237 0.77

3 8 0.0092 7.3 6.9 0.1 21 48 236 263 232 266 0.81

4 8 0.0007 0.55 10.5 0.3 21 48 265 292 261 297 0.83

5 8 9.5e-05 0.075 13.3 0.2 22 48 295 321 291 324 0.90

6 8 0.023 18 5.6 1.9 21 48 323 350 318 353 0.81

7 8 0.44 3.5e+02 1.5 1.0 22 48 353 379 351 382 0.74

8 8 6.4e-05 0.051 13.8 0.5 21 48 381 408 375 412 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	4.2	3.4e+03	-1.6	0.0	25	48	182	205	173	210	0.68
2	8	0.044	35	4.7	0.1	21	48	207	234	202	237	0.77
3	8	0.0092	7.3	6.9	0.1	21	48	236	263	232	266	0.81
4	8	0.0007	0.55	10.5	0.3	21	48	265	292	261	297	0.83
5	8	9.5e-05	0.075	13.3	0.2	22	48	295	321	291	324	0.90
6	8	0.023	18	5.6	1.9	21	48	323	350	318	353	0.81
7	8	0.44	3.5e+02	1.5	1.0	22	48	353	379	351	382	0.74
8	8	6.4e-05	0.051	13.8	0.5	21	48	381	408	375	412	0.88

Sequence Information

Coding Sequence: ATGAATGCTGCTCCAGGATCTAGCTGTGATCTAGTTGCTGCCAAGACAGAACCTGAGTACTATTTTCATGACGAGCCATCTACTTCAGCCGCAGGATGCGAGGACTTTGGGCTGAATTTCATTAAACAAGAACAAGATTCATCGGACGAGGAAATCCTTGCTGTGTCTACAGCTGCTGGAGATATTGATATTGTGCCGAGCTCCATTAAAAATGAAGAGGATTCTTCGGACGAGGAGAGCCTCTGTATGCCTAGAGGCAGTGAACAAGCGTGGAAACACATTAAACAGGAACCAGCCGTGGAACTACCTACATACTATGGAGAACATCAAGCTGCTGGAGATATTGATATTGAGCCGAGCTCCATTATAAAAGAAGAGGGTTCTGTGGACAAGGAAAGCCTCTGTATGCCTAGAGATTTCCATCTCAAAATACCTAAGTCGCCATCCACTGGAGTAAAAACATCAAGGAGCTATAGAAGTTCAAGGCAAGAAGTGAATAGATCTAAGGATTGCTTACCTGCAACTGCTGGGGCTGAGAAAAAATTTTCCTGTTGCGAATGCAGTTACAGCACAAATTATAGGCATAACTTAAAGCAGCACATACTGGGTAAACATTCTACTGACAAACCTCACTCCTGCCCCTACTGTGAATACAGTACTGTTCATAAGGGCAATCTAAAGCAGCACATACTGGGTAAACATTCTACTGACAAACCTCACTCCTGCCCCTACTGTGAATACAGTACTGTTCATAAGGGCAATCTAAAGCAGCACATACAGGCTAAACATTCAAACGATAAACCTCACTCCTGCCCCTACTGTGAATACAGTACTATTCAGACTGACAAACTAAAGCGTCACATACAGGCTAAACATTCAAATGATAAACCTCACTCCTGCCCCTACTGTGAATACAGTACTGCTCAGGCTGGCAATCTAAAGCGTCACATACAGGCTAAACATTCAAAAGATAGACCTCACTCCTGCCCCTACTGTGAATACAGTACTGTTCGGGCTTGCAATCTAAAGCTGCACATACAGGCTAAACATGCAAAAGATAGACCTCACTCCTGCCCCTACTGTGAATACAGTACTGTTCGGGCTGACAGTCTAATGTGTCACATACAGGCTAAACATGCTAACAATAAACCTCACTCCTGCCCCTACTGTGAATACAGTACTGTTCAGGCTGCCAATCTAAAGCGTCACAAAGAGGCTAAGCATACTAGAGACACAGCTCCCTTATAG
Protein Sequence: MNAAPGSSCDLVAAKTEPEYYFHDEPSTSAAGCEDFGLNFIKQEQDSSDEEILAVSTAAGDIDIVPSSIKNEEDSSDEESLCMPRGSEQAWKHIKQEPAVELPTYYGEHQAAGDIDIEPSSIIKEEGSVDKESLCMPRDFHLKIPKSPSTGVKTSRSYRSSRQEVNRSKDCLPATAGAEKKFSCCECSYSTNYRHNLKQHILGKHSTDKPHSCPYCEYSTVHKGNLKQHILGKHSTDKPHSCPYCEYSTVHKGNLKQHIQAKHSNDKPHSCPYCEYSTIQTDKLKRHIQAKHSNDKPHSCPYCEYSTAQAGNLKRHIQAKHSKDRPHSCPYCEYSTVRACNLKLHIQAKHAKDRPHSCPYCEYSTVRADSLMCHIQAKHANNKPHSCPYCEYSTVQAANLKRHKEAKHTRDTAPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01309747;
90% Identity: iTF_01309747;
80% Identity: iTF_01309747;