Rped012406.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000005:68860980-68868068[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0061 4.9 7.5 1.2 19 48 71 100 66 101 0.85 2 12 0.001 0.8 10.0 0.2 19 48 100 129 97 134 0.81 3 12 0.028 22 5.4 0.2 22 48 132 158 126 163 0.80 4 12 0.028 23 5.3 0.2 22 48 161 187 156 192 0.80 5 12 0.15 1.2e+02 3.0 0.1 22 48 190 216 185 222 0.79 6 12 0.094 75 3.6 0.2 22 48 219 245 213 247 0.82 7 12 0.0025 1.9 8.7 0.2 20 48 246 274 243 277 0.81 8 12 0.0018 1.4 9.1 0.4 19 48 274 303 271 310 0.80 9 12 0.0039 3.1 8.1 0.7 18 48 331 361 325 367 0.87 10 12 0.15 1.2e+02 3.0 0.6 21 48 363 390 359 395 0.79 11 12 0.055 44 4.4 0.2 22 48 393 419 388 421 0.86 12 12 0.00023 0.18 12.0 1.3 22 49 422 449 417 452 0.89
Sequence Information
- Coding Sequence
- ATGGACTTCAGAGAGATCCACCTCAAAAAACTTGAGTCACCCTCCACTGCAGTAAAAACATCAAGAAGTTATAGCAGTTCATGTCAAGAAGTGAATCTATTTAATGAATGCTCACCTGCAACTGCTGGGGCTGAGAAACGATTTGCCTGTTGTGAATGCAGTTACACAACAAATTATAGACACAACTTAAAGCTGCACATACTGTCTAAACATTCAAGAGACAAACCTCATTCCTGTCCCCATTGTGAATACAGTACTGTTCAGGCTCGCAGTCTAAAACATCACATACTGGCTAAGCATTCTAGTGAAAAACCTCACTCCTGCCCCTACTGTGAATACAGTGGTGTTCGGGCTGACAATCTAAAGCATCATATACTGGCTAAACATTCAATTGACAAACCTCACTCCTGCCCCTACTGTGAATACAGTGGTGTTCGGGCTGACAATCTAAAGCATCATATACTGGCTAAACATTCAATTGACAAACCTCACTCCTGCCCCTACTGTGAATACAGTGGTGTTCGGGCTGACAATCTAAAGCATCATATACTGGCTAAACATTCAATTGACAAACCTCACTCCTGCCCCTACTGTGAATACAGTGGTGTTTGGGCTGACAATCTAAAGCATCATATACTGGCTAAACATTCAATTGACAAACCTCACTCCTGCCCCTACTGTGAATACAGTACTGTTCTGGCTGACAATCTAAAGCATCATATACTGGCTAAACATTCAAGTGACAAACCTCACTCCTGCCCCTACTGTGAATACAGTGCTGTTCGGGCTGACAATCTAAAGCATCACATACTGGCTAAACATTCAAGTGACAAACCTCACTCCTGCCCCTACTGTGAATACAGTGCTGTTCGGGCTGACAATCTAAAGCATCATATACTGGCTAAACATTCAATTGACAAACCTCACTCCTGCTCCTACTGTGAATACAGTACTGTTCTGGCTGACACTCTAAAGCACCACATACAGACTAAACATTCAAGTGACAAACCTCACTCCTGCCCCTACTGTGAATACAGTACTCTTCAGGTTCGGAGTCTACAGCTTCACATACTAGCTAAACACTCAAGCGACAAACATTACTCGTGCTCCTACTGTGAATACTGTACTGTTCATGCTGGCAATCTAAAACGCCACATACAGACTGAACATTCAATCAATAAACCTCACTCCTGCCCCCACTGTGAATACAGTACCGTTCAGGCTGGCAATCTAATGGAGCACATTCTGGCTAAACATTCAAGAGATAAACCTCACCCCTGCCCCTACTGTGAGCACAGTACTGTTCAAGCTCGTAGTCTGAAGCGTCACATTCAGACTAAACATTCAAGTAACAAATCTCAATTATAG
- Protein Sequence
- MDFREIHLKKLESPSTAVKTSRSYSSSCQEVNLFNECSPATAGAEKRFACCECSYTTNYRHNLKLHILSKHSRDKPHSCPHCEYSTVQARSLKHHILAKHSSEKPHSCPYCEYSGVRADNLKHHILAKHSIDKPHSCPYCEYSGVRADNLKHHILAKHSIDKPHSCPYCEYSGVRADNLKHHILAKHSIDKPHSCPYCEYSGVWADNLKHHILAKHSIDKPHSCPYCEYSTVLADNLKHHILAKHSSDKPHSCPYCEYSAVRADNLKHHILAKHSSDKPHSCPYCEYSAVRADNLKHHILAKHSIDKPHSCSYCEYSTVLADTLKHHIQTKHSSDKPHSCPYCEYSTLQVRSLQLHILAKHSSDKHYSCSYCEYCTVHAGNLKRHIQTEHSINKPHSCPHCEYSTVQAGNLMEHILAKHSRDKPHPCPYCEHSTVQARSLKRHIQTKHSSNKSQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01309656;
- 90% Identity
- iTF_01309656;
- 80% Identity
- iTF_01309656;