Rped013773.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000005:146505672-146515505[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.82 6.5e+02 0.6 0.1 27 49 106 128 97 134 0.74 2 10 0.038 30 4.9 0.3 21 48 129 156 122 159 0.85 3 10 0.033 27 5.1 0.1 21 49 158 186 154 191 0.86 4 10 1.2 9.2e+02 0.2 0.0 22 48 188 214 184 219 0.82 5 10 0.012 9.2 6.6 0.4 20 48 215 243 199 245 0.78 6 10 0.0046 3.6 7.9 0.1 19 48 243 272 232 275 0.85 7 10 0.0036 2.8 8.2 0.7 17 48 270 301 268 303 0.77 8 10 0.00071 0.56 10.5 0.1 20 49 302 331 298 335 0.90 9 10 6.3e-05 0.05 13.8 0.4 21 49 332 360 328 364 0.86 10 10 0.00048 0.38 11.0 2.3 23 51 363 391 360 395 0.87
Sequence Information
- Coding Sequence
- ATGAACAGTACCAATGACATGTGTGACGCTGCTGGCGATCAGGATTCTACCTCTGTTGAGACGGAACCTCTCCCATGCCTACAAAGGAACTTGCCTTCATCATCAGGAATTAGAGAGGGAAGTTGGCAAGTGAAGGAAGAACCTGACTTTGTTATTCCAGTGGAGTTGGAAGGGCTTGATGGTTCTCATTTGATGGATGTGCCACCTGCAAATATTTGTGGAGCTTCGGAATCTGATAGCAGCAGCAGTGCTAACAGAACAGTTTCATTGAGCGATCGTACGTCTGTTACAAGAGGGACAGAAAAGCGTTACTATTGTGCGGAGTGCAGTTATAGCACAAATATATCGTGCAACTTAAAGAAACATGTTATAGCCAAACATACAAATGACAAACCTCACGTTTGCCCTTATTGTGATTATAGCGCTGTTCAGTCAGGCTGTCTAAAGCTCCATATAATAGCCAAGCATACGAATGACAAACCACACTCTTGCCCATACTGTGATTTTAACACCGCTCTGGCCAGTAGCCTAAAACGTCACATAATGACTAAACACACTAACGACAAACCTCTCGCCTGCTCTTCATGCGACTTCAGTACTACTCATCATGGCACTTTAAAACGCCACATAATGGCTAAACATACTAATGACAAACCATTCACTTGCCCTTATTGTGAATATAGTGCCGTACGTCCTGGCAATATAAAGAGCCATATAATGGCAAAACATACAAACGAGAAGCCTAACTTTTGCCCTTACTGCGACTATAGTTCTGTTCAGTCCTCTAGCTTAATGCAACACATTACGTCAAAGCATACAAATGACAAACCTCACACATGCCCTCACTGTGATTATACGGCTGTTCGGTCTAGCCATTTGACTCATCACATAATGGCCAAACATACAAATGAAAAACCTCTTACTTGCCCACAGTGTGATTTCAGTACGGCTTGGTCCAGTCACTTAAACCGACACATAACAGCTAAGCACACGAGTGATAAACGTCTCAGTTGTCCCCATTGTAATTTTATTACGGTTCAGTCTAGTAATCTGCAGCGCCATATAATGACAAAACACACAAATGTTAAACCTCACTGTTGCCCTCACTGTGATTTTAGTACTGTTCAATCGTGTCATCTGAAGCGTCACATAAAGGCAAGACATGGCATCAAAAAACCTTCTATCTGTGCTAGTTGA
- Protein Sequence
- MNSTNDMCDAAGDQDSTSVETEPLPCLQRNLPSSSGIREGSWQVKEEPDFVIPVELEGLDGSHLMDVPPANICGASESDSSSSANRTVSLSDRTSVTRGTEKRYYCAECSYSTNISCNLKKHVIAKHTNDKPHVCPYCDYSAVQSGCLKLHIIAKHTNDKPHSCPYCDFNTALASSLKRHIMTKHTNDKPLACSSCDFSTTHHGTLKRHIMAKHTNDKPFTCPYCEYSAVRPGNIKSHIMAKHTNEKPNFCPYCDYSSVQSSSLMQHITSKHTNDKPHTCPHCDYTAVRSSHLTHHIMAKHTNEKPLTCPQCDFSTAWSSHLNRHITAKHTSDKRLSCPHCNFITVQSSNLQRHIMTKHTNVKPHCCPHCDFSTVQSCHLKRHIKARHGIKKPSICAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01309709;
- 90% Identity
- iTF_01309709;
- 80% Identity
- iTF_01309709;