Rped013739.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000005:145677546-145699938[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.038 30 4.9 0.1 23 48 145 170 140 182 0.81 2 15 0.0094 7.5 6.9 0.2 20 48 200 228 193 230 0.89 3 15 0.00086 0.68 10.2 0.3 21 48 230 257 229 260 0.90 4 15 0.0013 1 9.7 0.2 17 44 255 282 253 285 0.82 5 15 0.0049 3.9 7.8 0.7 16 48 435 467 431 470 0.88 6 15 0.035 28 5.0 0.4 19 48 467 496 464 498 0.88 7 15 0.0015 1.2 9.4 0.7 19 48 496 525 493 529 0.89 8 15 0.029 23 5.3 0.2 17 49 552 584 549 587 0.84 9 15 0.018 14 6.0 0.3 20 48 584 612 580 617 0.87 10 15 0.12 92 3.4 0.1 26 48 619 641 613 645 0.87 11 15 0.018 14 6.0 0.2 17 48 668 699 665 702 0.85 12 15 0.015 12 6.2 0.4 19 48 699 728 696 732 0.89 13 15 0.12 93 3.3 0.1 21 48 730 757 725 758 0.88 14 15 0.015 12 6.2 1.5 18 48 756 786 752 788 0.73 15 15 0.0027 2.2 8.6 0.6 21 48 788 815 784 817 0.81
Sequence Information
- Coding Sequence
- ATGAGCTGTGCTGATGATCTTAGATATGAAGAAGATTTAATCTATTTCTGTTATTACTGCAATAGAGATTGGGATTCTTTTACTACTCTCAAAGCATGTGTCAGGAAGTGCTTTGCTCTTAGAGTCACAAATCCCTCTGAGAGAACGCCTTCATCATCATCATTAATATTTGAAGATGAGACTAGAAAAGTCCCTAGCAGCTTCAGGAGTTCTCAAGCATCCAATCCAACCAAAAAATGTTCATCTGCAATCACTAAAACAAAAAAGAAATACTCCTGCATGGATTGTAATTACAGTTGTAATTCCAAAGTTTCTTTGAAAGTTCATATAAAGGCTAAGCATACTGAAGATGAAACACTTACACAATGTGACTATGTTAGTCCTTCACCACTTAGCCTAAATGATAATACTGTTGAAAAAGATACAATGGTCAAACCTTTTACTTGTCCCCAATGTGACTATAGCACTGTTCGATCTAGTCATTTAAATAATCACATTATTGCTAAGCATACAAATGACAAACCTTTTAGATGTTCCTATTGTGATTTTAGTACGGTTAAGTCTGCTGTTCTAAAAAGTCACGTTATGGCTAAGCATACGGGTGAAAGGCCTTTATCTTGCCCTTTTTGTGACTATAGGACAGTTTGGTCCCGCTGCCTAGCTAACCATGTAAAGGTGAAGCACACAAACGAAAAACCTTTCACTTGCCCACACTGTGATTACTGTGCTGTTAAGTCCATCAATGTAAGGTATCACATAAAGTCCAAGCACTCCACTGACAAACCTTTCACATGCCCTTTTTGTAGTTACGCTACTGTTAGATCCTATAATATAAAGATTCATATAAAAGCTGCTGGAGATATTAATAGTGTGCCGAGCCCCATTAAAAAAGAAGAGGTTTCTTGGGACGAGGAAAGCCTCGCTATTTCCACAGGCAGTGACCAAGTGTGGAAACACATTAAACAGGAACCAGATGTGGAACTACCTACATATTATGGAGAGCTTGAACATAAAGATAAAGCAGTCTTCATCTGCCATCACTGCCAGCGAGCCTGGAAATCATTCATTTCACTGAGACGATGTGTACAGAAGTGCTTCCATTCAACAGTCACTAAGTTCCATCTCAAAAAACACAAGTCACCATTTACTGGAGTAAAAACTTTAAGGAGCTATAGAAGTTTAAGACAAGAAATGTGTCTATCTAAGGAATGCACCCCCACAACTGCTGGGGCTAAGAAACATTTTTCATGTTGTGAATGCAGTTACAGTACGAATTATAGACATGACTTAAAGCACCACATACAGAGTAAACATTCAAGTGACAAATCTCACTCCTGCCCCCACTGTGATTACAGTGCTGTTCAAGCTGCCACTCTAAAGCGTCACATACAGGCTAAACATTCGAGTGAAAAATCTTACTCCTGCCACCTCTGTGAATACAGTGCTGTTCAGGCAGGTAGTCTAAAGCGCCACATACAGGCTAAACATTCAAGTGATAAACCTCACTCCTGCCCACACTGTAAATACAGTGCTGTTCAGGCTGGTAGTTTACAGCGTCACATACAGGCTAAACATTCAATTGATAAACATCACTTATGCCCCTCCTGTGAGTACAGTGCTGCTCAGGCTGGTAGTCTAAAGCTTCATATACTCTCTAAACATTCAAGTGATAAACCTCACTCATGCCCTTACTGTGAATTCAGTACTGTTCACAAGAACAGCCTGAAACTTCACATACAGGCTAAACATTTAAGTGACAAACCTCACTCCTGCCCATACTGTGAATACAGTGCAGTTCAGGCTGGCCATCTGAAGTATCACATACAGGCTAAACATTCAAATAATAAACTTCACTCCTGCCCCTACTGTGGATATAGTACTGTTCAGGTTGGTAGTTTAAAGCGCCACATACAGGCTAAACATTCAATTCATAAACATCACTTATGCCCCTACTGTGAGTACAGTGCTGTTCAGGCTGGTAGTCTAAAGCTTCATATACTCTCTAAACATTCAAGTGATAAACCTCACTCATGCCCTTACTGTGAATTCAGTACTGTTCACAAGAACAGTCTAAAGCTTCACTTACAGGCTAAACACACAAGTGATAAACCTCACTCCTGCCCCCACTGTGCATACAGTGCTGCTCAGGCTGGCCATCTAAAATATCACATTCAGGCTAAACATTCAAATGATAAACCTCACTCCTGCCCCTACTGTGAACACAGTACTGGTCAGGTGGATAGTCTAAAACTGCACATACAGGCTAAACATTCAAGTGAAAAACCTCACTCCTGCCCTTATTGTAAATACAGTGCTGTTCACAGGGAAAGTCTAAAGCATCACATAGTGGCCAAACATTTAAATGAGAGCCCCCATTCCTGCCCCTACTGTGTATACAGTACTGTTTACAAGTATCGTCTAAACCGACACCTAGAGGCTAAGCACACAGGGTGA
- Protein Sequence
- MSCADDLRYEEDLIYFCYYCNRDWDSFTTLKACVRKCFALRVTNPSERTPSSSSLIFEDETRKVPSSFRSSQASNPTKKCSSAITKTKKKYSCMDCNYSCNSKVSLKVHIKAKHTEDETLTQCDYVSPSPLSLNDNTVEKDTMVKPFTCPQCDYSTVRSSHLNNHIIAKHTNDKPFRCSYCDFSTVKSAVLKSHVMAKHTGERPLSCPFCDYRTVWSRCLANHVKVKHTNEKPFTCPHCDYCAVKSINVRYHIKSKHSTDKPFTCPFCSYATVRSYNIKIHIKAAGDINSVPSPIKKEEVSWDEESLAISTGSDQVWKHIKQEPDVELPTYYGELEHKDKAVFICHHCQRAWKSFISLRRCVQKCFHSTVTKFHLKKHKSPFTGVKTLRSYRSLRQEMCLSKECTPTTAGAKKHFSCCECSYSTNYRHDLKHHIQSKHSSDKSHSCPHCDYSAVQAATLKRHIQAKHSSEKSYSCHLCEYSAVQAGSLKRHIQAKHSSDKPHSCPHCKYSAVQAGSLQRHIQAKHSIDKHHLCPSCEYSAAQAGSLKLHILSKHSSDKPHSCPYCEFSTVHKNSLKLHIQAKHLSDKPHSCPYCEYSAVQAGHLKYHIQAKHSNNKLHSCPYCGYSTVQVGSLKRHIQAKHSIHKHHLCPYCEYSAVQAGSLKLHILSKHSSDKPHSCPYCEFSTVHKNSLKLHLQAKHTSDKPHSCPHCAYSAAQAGHLKYHIQAKHSNDKPHSCPYCEHSTGQVDSLKLHIQAKHSSEKPHSCPYCKYSAVHRESLKHHIVAKHLNESPHSCPYCVYSTVYKYRLNRHLEAKHTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01309661;
- 90% Identity
- iTF_01309661;
- 80% Identity
- iTF_01309661;