Rped013757.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000005:146097133-146125154[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 3.9 3.1e+03 -1.5 0.2 15 36 233 259 219 269 0.54 2 8 0.014 11 6.3 1.2 20 48 270 298 262 300 0.82 3 8 0.0014 1.1 9.5 0.1 21 48 300 327 296 329 0.87 4 8 0.012 9.6 6.5 0.6 22 48 330 356 325 358 0.88 5 8 0.00013 0.1 12.8 0.4 22 48 359 385 354 388 0.86 6 8 0.00025 0.2 11.9 0.1 22 48 388 414 386 416 0.91 7 8 0.017 14 6.0 0.1 21 48 416 443 412 446 0.88 8 8 7.6e-06 0.006 16.8 0.2 21 48 445 472 440 474 0.84
Sequence Information
- Coding Sequence
- ATGTTGAATATCAAAGAGCTGGTTACCTTCGAAGTAGGTTTGTTCAGGTCTTCTTACAGCGTCACACTTATAACTGTTTCCTCCCTTTCTCTTTTAACTGGAATAATGAGCTCTTTCGGGGATGGTTCATGTACTAAAGGTGATGTTGTGGACTTTGCTGAAATGAAAGAAGAAAGTACTCTGGAAGAAAAATATCCCTCGTCATGCCTTGCTAATGCTACCAGTGGGGAATCTACTACTCTTCAAGATGAATCTCTTCATTGTGTTGAGCAAAATCATTCAACCACTCCAGATGCTGGAGAGGCTTTTACGGAATGTGTTTTCATTAAAGAAGAAAAACTGTCTGATGAAGAAAATTTCCTATCACCTAAAGGATCAAGCAGGGAATCGACCCCTGTTCATGAAGACCCTCTACCTAGAATTGAACAAAATATCCCCTCTACTTCAGGTGCTGCGTCTACAAGTGAGGAATCTACTCAAGGCGAATCCCTCCATAGTGCTGAACCAAACTCTTCTTCTACTTCAGGTGGTGAAGGTGTCATTATGGAATGTGTTTTCATCAAAGAAGAACGTTTTTCTGATGAAGAATATCCCCCGTCGCCTGCAGAGTTACCATTATGTGTAAATGTAACTGAGATTAGCGGAACCCGGGACTCTGCTAAGACCTTGAAGAGCCCTGAAGAATTCAACAACTCAAAGAAATCCACATCTGCAAACGATCAGCCCAAGAAGCGCTATTCCTGTTCAGAATGCAGTTATAGTGCGAATGTTAGACAGCGTATTAACCAACACGTTATGGCGAAGCACACAAATGAGAAACCTCTCTCTTGCCCCCATTGTGAATATTGTACTGTTCGTTCCACCCACTTAAAACAACATATAATGGCTAAGCACACACCTGAAAAACCTCTTACATGCCCTCATTGTGATTATAGCACTGTTCAGAAGATCAATCTTAAAGCTCACGTAATGGCTAAACATACACTTGAGAAACCTTTGATTTGCCCTCATTGCGAGTATTGTACTGTCCAACCGAGTAACCTTAAAGCTCACATAATGGCTAAACACACACTTGAAAAACCACTCACTTGCCCACATTGTGATTACAGCACTGTTCAGCGGAGTAATCTTAAAGCTCATATAACTGCTAGGCACACAGTTGAAAAACCTCTTAAATGCCCTCAATGTGATTTTTGTGCTAAGCACTCTACCAATTTGAAACGCCACATAATGGGTAAGCACTCTGGTGAGAAACCTCACTCTTGTCCTTTTTGCCATTTTAATACTTCTCTTTCTATTACATTAAAGAATCACATAATGGCTAAGCACACACATGAGAAACCTCTCACATGCCCTCAATGTGATTATAGAACTGTTCGCTCTGGTAATTTAAGTAGGCACATTAAACTTAAACATAGTGAAGGTTAA
- Protein Sequence
- MLNIKELVTFEVGLFRSSYSVTLITVSSLSLLTGIMSSFGDGSCTKGDVVDFAEMKEESTLEEKYPSSCLANATSGESTTLQDESLHCVEQNHSTTPDAGEAFTECVFIKEEKLSDEENFLSPKGSSRESTPVHEDPLPRIEQNIPSTSGAASTSEESTQGESLHSAEPNSSSTSGGEGVIMECVFIKEERFSDEEYPPSPAELPLCVNVTEISGTRDSAKTLKSPEEFNNSKKSTSANDQPKKRYSCSECSYSANVRQRINQHVMAKHTNEKPLSCPHCEYCTVRSTHLKQHIMAKHTPEKPLTCPHCDYSTVQKINLKAHVMAKHTLEKPLICPHCEYCTVQPSNLKAHIMAKHTLEKPLTCPHCDYSTVQRSNLKAHITARHTVEKPLKCPQCDFCAKHSTNLKRHIMGKHSGEKPHSCPFCHFNTSLSITLKNHIMAKHTHEKPLTCPQCDYRTVRSGNLSRHIKLKHSEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01309755;
- 90% Identity
- iTF_01309755;
- 80% Identity
- iTF_01309755;